RNA id: TU41311


Basic Information

Item Value
RNA id TU41311
length 222
lncRNA type intronic
GC content 0.32
exon number 3
gene id G30774
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65446354 ~ 65446930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCCTCATTCCCTCGATTGTGCACCCCTCATTCCCCTGATTGTGCCCCCCTCATTCCCTCGATTGTGCACCCCTTATTACCCTGATTGTGCACCCCTCATTACCCTGATTGTGCACCCCTTATTACCCTGATTGTGCACCCCTCATTACCCTGATTGTGCACCCCTTATTACCCTGATTGTGCACCCCTCATTACCCTGATTGTGCACCCCTCATTACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41300 lncRNA upstream 5556 65403522 ~ 65441108 (+) True G30767
TU41306 lncRNA upstream 13591 65431459 ~ 65433073 (+) False G30772
TU41307 lncRNA upstream 13591 65431459 ~ 65433073 (+) True G30772
TU41304 lncRNA upstream 14265 65430234 ~ 65432399 (+) True G30771
TU41296 lncRNA upstream 74866 65370408 ~ 65371798 (+) True G30763
TU41313 lncRNA downstream 20543 65467473 ~ 65468744 (+) True G30775
TU41319 lncRNA downstream 48591 65495521 ~ 65496339 (+) True G30779
TU41320 lncRNA downstream 50164 65497094 ~ 65500395 (+) True G30780
TU41567 lncRNA downstream 116724 65563654 ~ 65563914 (+) True G30959
TU41577 lncRNA downstream 149457 65596387 ~ 65597484 (+) True G30968
XM_007259483.3 mRNA upstream 197354 65246531 ~ 65249310 (+) True LOC103029237
XM_007259489.3 mRNA upstream 222164 65212693 ~ 65224500 (+) True echdc2
XM_007259490.3 mRNA upstream 235159 65183357 ~ 65211505 (+) True LOC103031359
XM_007259524.2 mRNA upstream 300037 65107510 ~ 65146627 (+) True LOC103041220
XM_022678446.1 mRNA upstream 359884 65077780 ~ 65086780 (+) True LOC103031672
XM_007259480.3 mRNA downstream 9807 65456737 ~ 65490821 (+) False fam20b
XM_022664809.1 mRNA downstream 11528 65458458 ~ 65490821 (+) True fam20b
XM_007259475.2 mRNA downstream 408004 65854934 ~ 65862128 (+) True plpp6
XM_022664860.1 mRNA downstream 422418 65869348 ~ 65886738 (+) True LOC103025553
XM_022664867.1 mRNA downstream 444000 65890930 ~ 65902416 (+) True LOC103024186
trnad-guc_10 other upstream 347302 65099291 ~ 65099362 (+) True trnad-guc_10
trnad-guc_9 other upstream 348091 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_6 other upstream 371477 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_5 other upstream 372022 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_4 other upstream 372992 65073601 ~ 65073672 (+) True trnad-guc_4
TU41629 other downstream 381851 65828781 ~ 65837365 (+) True G31000
XR_002649741.1 other downstream 402197 65849127 ~ 65849762 (+) True LOC111191945
TU42094 other downstream 1767375 67214305 ~ 67215186 (+) True G31355
TU42187 other downstream 2050273 67497203 ~ 67497697 (+) True G31407
TU42315 other downstream 2384890 67831820 ~ 67833215 (+) False hmcn1

Expression Profile