RNA id: TU42000


Basic Information

Item Value
RNA id TU42000
length 369
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G31278
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67100372 ~ 67103483 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccatcgagggggtcgaCGTGGAGGTGGTCAAATCCTACAaataccttggtgtgcacctggacgacaggctggactggtcagtgaacactgactccctctacaggaaggctcagagcagactgtacttcctcagaaggctcagggctttcaacatctgccagaaactcctcctgatgttctaccagtctgtggtagccagcgtcctcttttacactgttgtgtgttggggaggcagcatcagcaagagggatgctggacgactggacaggctggtgaggaaagctggttctgtgctgggattagagctggagtccttaacaccactggcagagaggagagccctcagtaagctgctgaacatcatggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41939 lncRNA upstream 140790 66821189 ~ 66959582 (+) True G31234
TU41940 lncRNA upstream 140790 66823404 ~ 66959582 (+) False G31234
TU41951 lncRNA upstream 182603 66892429 ~ 66917769 (+) True G31244
TU41887 lncRNA upstream 517806 66581802 ~ 66582566 (+) True G31192
TU41875 lncRNA upstream 646181 66453502 ~ 66454191 (+) True G31181
TU42112 lncRNA downstream 247312 67350795 ~ 67354687 (+) True G31370
TU42192 lncRNA downstream 379110 67482593 ~ 67517034 (+) True G31410
TU42165 lncRNA downstream 386154 67489637 ~ 67579907 (+) True G31406
TU42195 lncRNA downstream 389261 67492744 ~ 67506872 (+) False LOC103027733
TU42196 lncRNA downstream 389261 67492744 ~ 67493985 (+) False LOC103027733
XM_022678459.1 mRNA upstream 69 67097963 ~ 67100303 (+) True LOC111194387
XM_022665118.1 mRNA upstream 3458 67095898 ~ 67096914 (+) True LOC111191093
XM_007255217.3 mRNA upstream 240477 66801593 ~ 66859895 (+) True LOC103023947
XM_022665013.1 mRNA upstream 240477 66801593 ~ 66859895 (+) False LOC103023947
XM_015607354.2 mRNA upstream 250789 66801591 ~ 66849583 (+) False LOC103023947
XM_007255223.3 mRNA downstream 9713 67113196 ~ 67116181 (+) True LOC103025937
XM_022678463.1 mRNA downstream 89745 67193228 ~ 67194052 (+) True LOC111194388
XM_022678468.1 mRNA downstream 92033 67195516 ~ 67196427 (+) True LOC111194389
XM_022678471.1 mRNA downstream 379852 67483335 ~ 67506898 (+) True LOC103027733
XM_007255235.3 mRNA downstream 412449 67515932 ~ 67528356 (+) True LOC103028999
XR_002649741.1 other upstream 1250610 65849127 ~ 65849762 (+) True LOC111191945
TU41629 other upstream 1263007 65828781 ~ 65837365 (+) True G31000
trnad-guc_10 other upstream 2001010 65099291 ~ 65099362 (+) True trnad-guc_10
trnad-guc_9 other upstream 2001799 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_6 other upstream 2025185 65075116 ~ 65075187 (+) True trnad-guc_6
TU42094 other downstream 110822 67214305 ~ 67215186 (+) True G31355
TU42187 other downstream 393720 67497203 ~ 67497697 (+) True G31407
TU42315 other downstream 728337 67831820 ~ 67833215 (+) False hmcn1
TU42422 other downstream 916557 68020040 ~ 68022934 (+) False LOC103035359
TU42555 other downstream 1723160 68826643 ~ 68827572 (+) True G31702

Expression Profile