RNA id: TU42067


Basic Information

Item Value
RNA id TU42067
length 312
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G31329
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67122629 ~ 67122940 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tattataaACAGTTGGCTGAAGACAAGCAGTCCAGGAACATTCATTACTGAAACCCTGTCTGACTAGTGTGGTaggccctggggttaggggcgtgaccactgtgacccggaaggaggaagcacccagagaacacagacacggggagtaaatgaactcaaatcatacctttattttcttttaacgccctccaccacacccagaataactcaaataaacataactcagcccaatggggctctagagtctgtagaattacTTAGTTGTCGGttaaaggtccgtgcagcctcagctcACTCCTCCCAAGTCCAAGT

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42041 lncRNA downstream 25087 67089429 ~ 67097542 (-) True G31303
TU42054 lncRNA downstream 64195 67058059 ~ 67058434 (-) True G31316
TU41882 lncRNA downstream 638928 66481425 ~ 66483701 (-) True G31187
TU41879 lncRNA downstream 647741 66474438 ~ 66474888 (-) True G31185
TU41877 lncRNA downstream 656673 66465545 ~ 66465956 (-) True G31183
TU42091 lncRNA upstream 81018 67203958 ~ 67204249 (-) True G31352
TU42135 lncRNA upstream 192904 67315844 ~ 67316173 (-) True G31385
TU42279 lncRNA upstream 531210 67654150 ~ 67654617 (-) True G31480
TU42282 lncRNA upstream 534635 67657575 ~ 67659085 (-) True G31482
XR_002649744.1 lncRNA upstream 562426 67685366 ~ 67686312 (-) True LOC111191948
XM_007255222.3 mRNA downstream 34478 67086434 ~ 67088151 (-) True LOC103025634
XM_015607347.2 mRNA downstream 43187 67053665 ~ 67079442 (-) False senp6
XM_007255225.3 mRNA upstream 5229 67128169 ~ 67151426 (-) True LOC103026240
XM_007255224.3 mRNA upstream 5229 67128169 ~ 67150321 (-) False LOC103026240
XM_022665136.1 mRNA upstream 33517 67156457 ~ 67168076 (-) False LOC103026745
XM_022665128.1 mRNA upstream 33517 67156457 ~ 67168076 (-) True LOC103026745
XM_022665145.1 mRNA upstream 91608 67214548 ~ 67315751 (-) True LOC103032908
TU42030 other downstream 231010 66862465 ~ 66891619 (-) False LOC103031958
trnad-guc_8 other downstream 2024956 65097602 ~ 65097673 (-) True trnad-guc_8
trnad-guc_7 other downstream 2029480 65093078 ~ 65093149 (-) True trnad-guc_7
trnad-guc_3 other downstream 2049816 65072742 ~ 65072813 (-) True trnad-guc_3
trnad-guc_2 other downstream 2050414 65072144 ~ 65072215 (-) True trnad-guc_2
TU42210 other upstream 300932 67423872 ~ 67432424 (-) True G31424
TU42226 other upstream 380809 67503749 ~ 67528337 (-) True G31437
trnai-aau other upstream 534525 67657465 ~ 67657537 (-) True trnai-aau
trnai-aau_1 other upstream 534686 67657626 ~ 67657698 (-) True trnai-aau_1
trnai-aau_2 other upstream 535241 67658181 ~ 67658253 (-) True trnai-aau_2

Expression Profile