RNA id: TU42135


Basic Information

Item Value
RNA id TU42135
length 244
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G31385
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67315844 ~ 67316173 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacaccctcccaTCTCAGTCATTCTCATTTCTACTCTcgttctctctatctctctctttctttatctctctttctccccctctcccATCTCTCCCATTCCATTAAGTCCCcctgtatttctctttctcttcctctttctttgtatctctcttcctctctctgtatctccctctctcaccacatccattacatttcattcagtctctgtctctctctctcttcacactCTCAttcagtc

Function

GO:

id name namespace
GO:0007610 behavior biological_process
GO:0030537 larval behavior biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42091 lncRNA downstream 111595 67203958 ~ 67204249 (-) True G31352
TU42067 lncRNA downstream 192904 67122629 ~ 67122940 (-) True G31329
TU42041 lncRNA downstream 218302 67089429 ~ 67097542 (-) True G31303
TU42054 lncRNA downstream 257410 67058059 ~ 67058434 (-) True G31316
TU41882 lncRNA downstream 832143 66481425 ~ 66483701 (-) True G31187
TU42279 lncRNA upstream 337977 67654150 ~ 67654617 (-) True G31480
TU42282 lncRNA upstream 341402 67657575 ~ 67659085 (-) True G31482
XR_002649744.1 lncRNA upstream 369193 67685366 ~ 67686312 (-) True LOC111191948
TU42363 lncRNA upstream 517250 67833423 ~ 67835048 (-) True G31546
TU42333 lncRNA upstream 527111 67843284 ~ 67844523 (-) True G31523
XM_022665145.1 mRNA downstream 93 67214548 ~ 67315751 (-) True LOC103032908
XM_022665136.1 mRNA downstream 147768 67156457 ~ 67168076 (-) False LOC103026745
XM_022665128.1 mRNA downstream 147768 67156457 ~ 67168076 (-) True LOC103026745
XM_007255225.3 mRNA downstream 164418 67128169 ~ 67151426 (-) True LOC103026240
XM_007255224.3 mRNA downstream 165523 67128169 ~ 67150321 (-) False LOC103026240
XM_007255229.3 mRNA upstream 36716 67352889 ~ 67415892 (-) False sh3rf1
XM_007255228.3 mRNA upstream 36716 67352889 ~ 67415892 (-) True sh3rf1
XM_015607348.2 mRNA upstream 118796 67434969 ~ 67479787 (-) False nek1
XM_015607349.2 mRNA upstream 118796 67434969 ~ 67479787 (-) False nek1
XM_007255233.3 mRNA upstream 118796 67434969 ~ 67479787 (-) True nek1
TU42030 other downstream 424225 66862465 ~ 66891619 (-) False LOC103031958
trnad-guc_8 other downstream 2218171 65097602 ~ 65097673 (-) True trnad-guc_8
trnad-guc_7 other downstream 2222695 65093078 ~ 65093149 (-) True trnad-guc_7
trnad-guc_3 other downstream 2243031 65072742 ~ 65072813 (-) True trnad-guc_3
trnad-guc_2 other downstream 2243629 65072144 ~ 65072215 (-) True trnad-guc_2
TU42210 other upstream 107699 67423872 ~ 67432424 (-) True G31424
TU42226 other upstream 187576 67503749 ~ 67528337 (-) True G31437
trnai-aau other upstream 341292 67657465 ~ 67657537 (-) True trnai-aau
trnai-aau_1 other upstream 341453 67657626 ~ 67657698 (-) True trnai-aau_1
trnai-aau_2 other upstream 342008 67658181 ~ 67658253 (-) True trnai-aau_2

Expression Profile