RNA id: TU42279


Basic Information

Item Value
RNA id TU42279
length 468
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G31480
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67654150 ~ 67654617 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcttttttttttttttttattttatttctaattttttcccattttctccccaatttacacggccaattacccaacccattcattaggactccccctatcactagtgatacctcaacacaccaggagggtgaagactagcacatgcttcctccgatacatgtgaagtcagccaccgcttcttttcgagctgctgctgatgcagcattaccgagcagccagcgcgcttggaggaaagcgcagcggctcggctccagtacatcagctcacagacgccctgtgctgcagacatccccgtgggagtgatgtggggagagagcgccatctacccacccagagggagcagggccaattttgctccctctgacgccggcagcttgatggcaaagctgcatgagctggggttcgaaccggcgacctcctgctcatagtggcagcgctttagaccgctggaccactcggcgccccaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42135 lncRNA downstream 337977 67315844 ~ 67316173 (-) True G31385
TU42091 lncRNA downstream 449901 67203958 ~ 67204249 (-) True G31352
TU42067 lncRNA downstream 531210 67122629 ~ 67122940 (-) True G31329
TU42041 lncRNA downstream 556608 67089429 ~ 67097542 (-) True G31303
TU42054 lncRNA downstream 595716 67058059 ~ 67058434 (-) True G31316
TU42282 lncRNA upstream 2958 67657575 ~ 67659085 (-) True G31482
XR_002649744.1 lncRNA upstream 30749 67685366 ~ 67686312 (-) True LOC111191948
TU42363 lncRNA upstream 178806 67833423 ~ 67835048 (-) True G31546
TU42333 lncRNA upstream 188667 67843284 ~ 67844523 (-) True G31523
TU42336 lncRNA upstream 188667 67843284 ~ 67889027 (-) False G31523
XM_007238290.3 mRNA downstream 47974 67585111 ~ 67606176 (-) True LOC103030302
XM_015607348.2 mRNA downstream 174363 67434969 ~ 67479787 (-) False nek1
XM_015607349.2 mRNA downstream 174363 67434969 ~ 67479787 (-) False nek1
XM_007255233.3 mRNA downstream 174363 67434969 ~ 67479787 (-) True nek1
XM_007255229.3 mRNA downstream 238258 67352889 ~ 67415892 (-) False sh3rf1
XM_007240731.2 mRNA upstream 197940 67852557 ~ 67853773 (-) True LOC103045211
XM_007240732.3 mRNA upstream 200989 67855606 ~ 67862313 (-) False arpc5
XM_007240734.3 mRNA upstream 277943 67932560 ~ 67940713 (-) True LOC103046133
XM_007240735.3 mRNA upstream 313519 67968136 ~ 67972358 (-) True LOC103046427
XM_007240737.3 mRNA upstream 318608 67973225 ~ 67981928 (-) True LOC103046744
TU42226 other downstream 125813 67503749 ~ 67528337 (-) True G31437
TU42210 other downstream 221726 67423872 ~ 67432424 (-) True G31424
TU42030 other downstream 762531 66862465 ~ 66891619 (-) False LOC103031958
trnad-guc_8 other downstream 2556477 65097602 ~ 65097673 (-) True trnad-guc_8
trnad-guc_7 other downstream 2561001 65093078 ~ 65093149 (-) True trnad-guc_7
trnai-aau other upstream 2848 67657465 ~ 67657537 (-) True trnai-aau
trnai-aau_1 other upstream 3009 67657626 ~ 67657698 (-) True trnai-aau_1
trnai-aau_2 other upstream 3564 67658181 ~ 67658253 (-) True trnai-aau_2
trnat-agu_1 other upstream 3962 67658579 ~ 67658651 (-) True trnat-agu_1
TU42346 other upstream 201030 67855647 ~ 67862272 (-) True arpc5

Expression Profile