RNA id: TU42398



Basic Information


Item Value
RNA id TU42398
length 1709
lncRNA type sense_over
GC content 0.40
exon number 7
gene id LOC103046133
representative False

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67932560 ~ 67940713 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CTCTGTCCATGAGCATCGGTAGTGTTCACTGCAGCCCCCTCAGTATTTCTGATCTATCAcatttttgagtgtttttgtgtgtgtgtatatatcatGGGTGATCGTGTGTGATGGTCAGAGTGTCTGGTGGAGGTTGGACCCGCTGAGTCTGATCCAGGAGGAGATAAATCAGGAGATAAAGATGATCAGAGATCTGCTGCTGCAGTCGCTGAACCTCAGCACGCTGCTGGCCTGTTCCGTGCTGAAGGTGCCGCAGATCGCCCTGCTGACCCGGACCAAGTCTCCTAAAGGTATATTGTGTTTACAACATATGAGATGTATCATGAATATCCACTGGAAGCATACTTGGAGTACCCTGCCCTCATAGCCCAAGATACTGTCCTGTTCCTGCTGATACTTCACTATGGAGGTAACCTGAGACAGAGCCTCATCTACAGCCTCCTTTTTGTTGGGGTGTCGCAGCTCCTTACTCTGAAGAGCTGGATCATTGATTCAGCAATGagCCTGTGCACATTGATGAGTGCGAGCAGTAGGTTTGCTCAGTTGCAGTGCCTCTGGCAGACCAAGGATGCAGGTCAGCCAGAATACTGACTACTGTTCTTACTTCTGGGGATCTGAAAGTCCTCCTGCGGTTTGTCATCATGAGCACGCTGAACGGCTGGGTCCTGGCTACTGTGGTCTTCTACAAGTGGAGTGGTGGAAAGCTAAAATGACAGACGATTCAGACACTTCTATGGTGACTAAGTGAACACTGCCCTGCCACTCACTGACCAACCTTTGACCAAGCTGAGGGGAACGAGTGAGGCTTCATTCGCCCAGGGGCCAGGCTTTAGACTCTCTTTAGGCCAGTGCTGTTTATGAACTCAGAAACCAACCAAGATCCTTTCTCTCAGTGCGTTTCCTAGTTTCCTCAGAGTTTCCCAGAAACTAGTGATCTGCAGGAACTGGGTATATTATCAaagcatacatatatatacatacatacatacaaagtAAACATATTACACCTTTACTGATGTAGTAAACAGCATCATACGTACAATCGAAGCTCAGTACTCATCTGAATGACGGTTTGGGTGGGAACTGCTGTTAGCAAGCATCTGTTATTCAAATGTTTGGGCACATGTATGCTGCAGTAACTTAGTTATTTTAACATTGtcaaaaatgtttagttttcaGAATATCATAACATATTTAGACATATTTAGAAAAATGCTGCAAAATACAAGGAGCAACAGTGTACTTTTTCAAATCATGTAACTTACTCAAAATGTTTACAATTGTTCACAGTTGTTGTAATACACTAATGCATGTACGGTAACTGTCAGTAAGGCTtggaaaatgtatttctttggacatttatttctttaataacTCACATATGCGTAACCGCactatttaattacagtatagcGCTGGAATCCAGTGAGCTCTTTACAACCTCCCATTGTTTTACTAATGTTAGCAAAGCCAGACTGAAATACTTCAAATTTAGTGACTGATTAAGATCTGTCCCAGTACTACTGTCTATACTCATTGATTCAACTTAGTTGATTACCATTTATTAGTTAAGTTCATCATGTGTAAGGAAATACACAAAAACCAtcaactgttctaaacatcttaCCCTCAGCTTCCCATCCCTCCCTACCTTTTTAAATGCCCATGAATAAGAGTGTATGATTGATTATGATGCAAACtgacaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42386 lncRNA downstream 12374 67915459 ~ 67920354 (-) True G31564
TU42336 lncRNA downstream 43701 67843284 ~ 67889027 (-) False G31523
TU42348 lncRNA downstream 47295 67855647 ~ 67885433 (-) False arpc5
TU42333 lncRNA downstream 88205 67843284 ~ 67844523 (-) True G31523
TU42363 lncRNA downstream 97680 67833423 ~ 67835048 (-) True G31546
TU42400 lncRNA upstream 1785 67942497 ~ 67942707 (-) True G31572
TU42401 lncRNA upstream 2197 67942909 ~ 67943153 (-) True G31573
TU42431 lncRNA upstream 79375 68020087 ~ 68022887 (-) True G31598
TU42453 lncRNA upstream 88766 68029478 ~ 68030990 (-) True G31616
TU42470 lncRNA upstream 356152 68296864 ~ 68297068 (-) True G31630
XM_007240732.3 mRNA downstream 70415 67855606 ~ 67862313 (-) False arpc5
XM_007240731.2 mRNA downstream 78955 67852557 ~ 67853773 (-) True LOC103045211
XM_007238290.3 mRNA downstream 326552 67585111 ~ 67606176 (-) True LOC103030302
XM_015607349.2 mRNA downstream 452941 67434969 ~ 67479787 (-) False nek1
XM_007240735.3 mRNA upstream 27424 67968136 ~ 67972358 (-) True LOC103046427
XM_007240737.3 mRNA upstream 32513 67973225 ~ 67981928 (-) True LOC103046744
XM_007233633.3 mRNA upstream 283112 68223824 ~ 68229829 (-) True mycn
XM_022665319.1 mRNA upstream 399113 68339825 ~ 68351833 (-) True ddx1
XM_015601387.2 mRNA upstream 885277 68825989 ~ 68828226 (-) True fam84a
TU42346 other downstream 70456 67855647 ~ 67862272 (-) True arpc5
trnat-agu_1 other downstream 274077 67658579 ~ 67658651 (-) True trnat-agu_1
trnai-aau_2 other downstream 274475 67658181 ~ 67658253 (-) True trnai-aau_2
trnai-aau_1 other downstream 275030 67657626 ~ 67657698 (-) True trnai-aau_1
trnai-aau other downstream 275191 67657465 ~ 67657537 (-) True trnai-aau
TU42459 other upstream 150508 68091220 ~ 68091581 (-) True G31622
TU42561 other upstream 887273 68827985 ~ 68829020 (-) False fam84a
XR_002649364.1 other upstream 1204596 69145308 ~ 69161904 (-) True sec63
TU43425 other upstream 3148163 71088875 ~ 71089461 (-) True G32343
trnat-ugu_81 other upstream 3155919 71096631 ~ 71096703 (-) True trnat-ugu_81

Expression Profile