RNA id: TU42453


Basic Information

Item Value
RNA id TU42453
length 1466
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G31616
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 68029478 ~ 68030990 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cATTACTACATTACTGCTGCCAAATACAGATGGAGAGGAGAAACCAGTTTGAGGTGCATGTCGTTTGTGCACTGCttgttaaaattaatacattcaaAAGCCACTGTTTTACCAGCTACCAAATTATTAATGCATACATTTTATGCCATGTGACTGAAGAAAAAGGTGTGCGAGGTAAATCAAACACAAAGGCTGAATCCCAAATCAAGAATTATAAGATACCACTATTAAAATAGGAAAAATTACTAAAAATTGTccaagtgtttaatttgtgatGCAGTAAACCAACCCAACAACCTGGCAGAATAGACAggattttttaaaggaaaaaaagcaatttttaaCTCTTAGAAGGAAAAATAAAGCTgtacaaagtcattttaaaaagaacGTTTTCATACAGATCAAAAAGACGAGATCTGctgctgcaacaaaaaaaaaaagtaaattctgGGAATCAGGGAAGCTAACAGTATTGAATTTACAATATACTCAaatcacacacagaacacattaAGCAAACTAAAAGTTTTGAGCACCAAAGTGTTTAACACACAAAGTCAGTTAGTAACAAAACATTTCCATTCTGACCACTAGCATATTACGTAGAAAGTCAATGAAAAATAGATATACAGGTTCACCCAGTGAGCTACAATTGAGCAAATTTCCCCACCTTGACaagttttacatttgtttttttttttttatagcaaaaGGGCAACGCAATCTTAAAGCAAGAACTATCCAGCTATAAGCAGTTTATGAGGAAACTGCTTACTAATTAAAATATGACTGGAGCTTTCCTATTGCCTAGCAGTGTCTGTTTACTGATAAAGTCCCGCCTTGAAATATAAAGATAATTGGATTGGTGGAAATGCCGCAGGAAGGATTGCTAGTGGTAAAATGAAATAACTGTTTGATGGATCATGTCCGTCAACTGTGAAGCTTCAAATGTGACCGGTAATGGCAGAACTGCATTTCTAAAACGAGTAGATGtggatggatgtatgtatggatggatggatgtcaACAAGCTAAAGagggcaacaaaaaaaagagataagatACTTAAAGAAAAACAACTAATGACATTACGGCACTaggaaaatacacaaataaatgcaaccataatattaaatatatacaaatattttgtgACAAACAACAAAAAGTTTGGGATGGCTGACAAAAACTTTAGGACTGCGCAATTCAAATTTCCCACAGTATCAGCCCTACCTCCATAAACTAACAATACACTAGTCAGTGTGGTTGGTTGTCTGTTGGCTGACATGCTCCTTCAAATACATTaggctgtaaaataaaaatgcattagtagaagttaaaaaatgtgtattttactggCTTTGTGCATCTCAAAGGAAGCACAGGCTAGTCTTCACCTATACACCACTGGTAGCACGTTTGGTGGAGTCAAAGCTACTGATTGATAACTGGCTACGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42431 lncRNA downstream 6591 68020087 ~ 68022887 (-) True G31598
TU42401 lncRNA downstream 86325 67942909 ~ 67943153 (-) True G31573
TU42400 lncRNA downstream 86771 67942497 ~ 67942707 (-) True G31572
TU42398 lncRNA downstream 88766 67932728 ~ 67940712 (-) False LOC103046133
TU42386 lncRNA downstream 109124 67915459 ~ 67920354 (-) True G31564
TU42470 lncRNA upstream 265874 68296864 ~ 68297068 (-) True G31630
TU42537 lncRNA upstream 755410 68786400 ~ 68787002 (-) True G31686
TU42562 lncRNA upstream 795446 68826436 ~ 68827522 (-) False fam84a
TU42679 lncRNA upstream 1027764 69058754 ~ 69059080 (-) True G31782
TU42703 lncRNA upstream 1248678 69279668 ~ 69281508 (-) True G31803
XM_007240737.3 mRNA downstream 47550 67973225 ~ 67981928 (-) True LOC103046744
XM_007240735.3 mRNA downstream 57120 67968136 ~ 67972358 (-) True LOC103046427
XM_007240734.3 mRNA downstream 88765 67932560 ~ 67940713 (-) True LOC103046133
XM_007240732.3 mRNA downstream 167165 67855606 ~ 67862313 (-) False arpc5
XM_007240731.2 mRNA downstream 175705 67852557 ~ 67853773 (-) True LOC103045211
XM_007233633.3 mRNA upstream 192834 68223824 ~ 68229829 (-) True mycn
XM_022665319.1 mRNA upstream 308835 68339825 ~ 68351833 (-) True ddx1
XM_015601387.2 mRNA upstream 794999 68825989 ~ 68828226 (-) True fam84a
XM_022665339.1 mRNA upstream 1065264 69096254 ~ 69140809 (-) True scml4
XM_022665330.1 mRNA upstream 1065264 69096254 ~ 69140794 (-) False scml4
TU42346 other downstream 167206 67855647 ~ 67862272 (-) True arpc5
trnat-agu_1 other downstream 370827 67658579 ~ 67658651 (-) True trnat-agu_1
trnai-aau_2 other downstream 371225 67658181 ~ 67658253 (-) True trnai-aau_2
trnai-aau_1 other downstream 371780 67657626 ~ 67657698 (-) True trnai-aau_1
trnai-aau other downstream 371941 67657465 ~ 67657537 (-) True trnai-aau
TU42459 other upstream 60230 68091220 ~ 68091581 (-) True G31622
TU42561 other upstream 796995 68827985 ~ 68829020 (-) False fam84a
XR_002649364.1 other upstream 1114318 69145308 ~ 69161904 (-) True sec63
TU43425 other upstream 3057885 71088875 ~ 71089461 (-) True G32343
trnat-ugu_81 other upstream 3065641 71096631 ~ 71096703 (-) True trnat-ugu_81

Expression Profile