RNA id: TU43208


Basic Information

Item Value
RNA id TU43208
length 1567
RNA type TUCP
GC content 0.52
exon number 2
gene id G32198
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71073848 ~ 71075886 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtggagactgtCCGACCTGACTTCTTCGCTCCTCCACCCCGCCCACCTGCACGCGGCTGCTCTCGCTGACCAGCAAGGCGAGGCGCAGCCGCATCTCGAACAAGCCTaatgactgcagcctgcaggagggcggagttggacgtccagtgcgTCCAGCCCCGCCGACATTGTTAGCGTCATGCCGTtcagtcccgcccactttgtcagcatcatgtcttaggtccgcctctgaacggaagtaaacaatgaaATCAGAGTTTAAAGCAATAATCAAAGACGGGGTTAAAAAATCTGGCAGGACAAATGGGATAAGGAGGAGAAAGGCAGGCATTTTTATAACATACAAAAAGAGGTAAAAGAGGAAAAACAGGTCACTATCACGGCAGGAGGAAACCTGGTCCACCAGGCTAAGGTTAGGACATACAGAACTGAATAGTGGACTTCACATTATAGGAAAACATGAGAATGGAATGTGTCCTTATTGTAATGAATTAGAAACCGTAAATCATGTACTTCTTACATGCAGATATTACTCTAAAGAGAGAGAACGTTTTAACAGGGTAACGAAGAACTCAGTTACATTGGAAAAATTATTGAGTTTGTGTGGTACAGAGGCTactgcGCTGTGATTTGTCTCACGGAAACCTGGCTGAACCAGACCATGCCGGACTCAGCCTTCCAGCTCGCCGGCCGGCAGCTCTTCCGAGCGGACCGCAGCCTTTTATCTGGAAAATCCCGGGGGGCGGTTTGTgcgtctacataaacaaaggttggtgcacaaactgcgtgttggtaaacagccactgctccgaggcgacagaacagctgactgtgaagtgtcgccctcactatctgcctcgtgagttttcggcggtgttcgtgattgctgtttacatagcaccggatgctaatgctaacaacgcgctgaaggagctccatgacaacatcagctcgcttcagaacaagcatccggacgcgttctacgtggtagcgggggattttaaccacgtagaactgaagaacacgctGCCGAGGTTTTACCAACACGTGAACATCCCAACGCGAGGTAATAATACGTTAGACCGCGTTTATTCCTCCGTGAAAGACGCTTACAGGGCATTCCCGCGCCCCACCTCGGGCTTTCagaccacatctccatcatgctggtccccgcaTACCACCCCCCGCTGCGACGctccaaacccacacagaagaccatcactgtgtggcccagtgacggcgacgctgtgctgcaggactgcttcggctgcacagactggcaggtcttcagggatgctgctgagtgtgagggggagctggatctggaggaatacacatctgctgttcttgggtacatcagcaagtgcactgAGGATGTCACTACcaccaagactgtgacttgctaccccaaccagaagccctggctgaacgcagaggtgcgttctctgttgaaagccagggatgctgccttcaggtctGGAGACCCAGACGAACTCAGaagggctagaagagagctgactgttggagttaagagggcaaaagctgcatatgctcagaaaatccagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43180 lncRNA upstream 114091 70945974 ~ 70959757 (+) True G32174
TU43154 lncRNA upstream 206339 70856811 ~ 70867509 (+) True G32151
TU43137 lncRNA upstream 277745 70794559 ~ 70796103 (+) True G32139
TU43106 lncRNA upstream 393059 70679993 ~ 70680789 (+) True G32120
TU43103 lncRNA upstream 407918 70660684 ~ 70665930 (+) True G32117
TU43233 lncRNA downstream 27339 71103225 ~ 71105791 (+) True G32210
TU43245 lncRNA downstream 53804 71129690 ~ 71132041 (+) True G32219
TU43477 lncRNA downstream 185419 71261305 ~ 71291859 (+) True G32379
XR_002649768.1 lncRNA downstream 382020 71457906 ~ 71462877 (+) True LOC111191996
TU43666 lncRNA downstream 1073389 72149275 ~ 72149476 (+) True G32535
XM_022665740.1 mRNA upstream 221882 70826240 ~ 70851966 (+) True disp1
XM_007255627.3 mRNA upstream 221882 70826240 ~ 70851966 (+) False disp1
XM_007255629.3 mRNA upstream 221882 70827227 ~ 70851966 (+) False disp1
XM_007255631.3 mRNA upstream 252556 70777869 ~ 70821292 (+) True LOC103037005
XM_022665798.1 mRNA downstream 12954 71088840 ~ 71096529 (+) True LOC103039880
XM_022665824.1 mRNA downstream 30745 71106631 ~ 71113908 (+) True LOC103046432
XM_007242524.3 mRNA downstream 30785 71106671 ~ 71113908 (+) False LOC103046432
XM_007239526.3 mRNA downstream 115934 71191820 ~ 71256074 (+) True suco
XM_007239533.3 mRNA downstream 202432 71278318 ~ 71286026 (+) True scrn2
TU43152 other upstream 206205 70856811 ~ 70867643 (+) False G32151
TU43083 other upstream 434109 70639083 ~ 70639739 (+) False G32105
TU42949 other upstream 744820 70303036 ~ 70329028 (+) True G32009
TU42854 other upstream 874106 70196925 ~ 70199742 (+) True G31939
TU43252 other downstream 61626 71137512 ~ 71141184 (+) True G32225
TU43257 other downstream 91638 71167524 ~ 71169556 (+) True G32229
TU43523 other downstream 888118 71964004 ~ 71980363 (+) False dab1
TU43802 other downstream 1520020 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 2363170 73439056 ~ 73506987 (+) True LOC103030552

Expression Profile