RNA id: TU43233



Basic Information


Item Value
RNA id TU43233
length 844
lncRNA type inter_gene
GC content 0.38
exon number 5
gene id G32210
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71103225 ~ 71105791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTCATTCACAAAGGTCCAGGCCATTTGCACCAGCTTCTGCACTTTGTTCTTGTCTCCTTTGAGTTGTTTGGCATAACGCAAAAGGAACTGATATGGATGCTCTACTTGCAGATCAAACTTTATTGTCTGAAGCAATATTCTCTCCAACACCATAACTTCTTCCTTTGGATCATCCCCAAACTGGGCGAACTGCACATCATTAAGCAGGCTGCGAGCTGTTTTTATTATGTCTTTGCACTTTTTTGGAGTTTCCTCAACCTTTCCAGCCAAGAACAGACAGCAAGCCCCTGTGACATATCTCGGGAACTGCTTGAAGGAATGAAACATGTAGAAGCGATGGAAGTAAATAATCCCTGTGGCCAGAGTATCATAGTGTAGTCCCAGTCGAGTTCCAACGTCGAATATGAAGCGGGCCCCCTCTCTCCGGTATCGGGCCTCAGTGGCCGGATCCAGGCCCTCGGACTGGGATGGGGTGTGGGCCAGGTCCTTCTTGTCCCAGTACCAACATGGCTTGATGTGGTCCAGATTAGTGGTCAAGCTGCTGAGAGCGGAGTTCTCCTTGTTCTCCTTCATTTGACACAGATCGGAAGTGCTGCTGACAAAGCTGGAGGCACAAAGAGCTGCTGCTTCTCCTCAGCGCGGCCGGCGGACCCGCGGCTCCTTCTCACTGAAGctcagctccgctcctctcCCTCAGCGCCCGCAGACTCTCCCGCAGCCCGGCCCGGAGCACTGTGAGAATACCGGCGCTCTACACCGCGTGCAGCGCCGCTTCTCTGAGCTCTCTTTCACACCTgaacacaggaacacacacacagccgcaCCGCACTCTTCCTCGCGCGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43180 lncRNA upstream 143468 70945974 ~ 70959757 (+) True G32174
TU43154 lncRNA upstream 235716 70856811 ~ 70867509 (+) True G32151
TU43137 lncRNA upstream 307122 70794559 ~ 70796103 (+) True G32139
TU43106 lncRNA upstream 422436 70679993 ~ 70680789 (+) True G32120
TU43103 lncRNA upstream 437295 70660684 ~ 70665930 (+) True G32117
TU43245 lncRNA downstream 23899 71129690 ~ 71132041 (+) True G32219
TU43477 lncRNA downstream 155514 71261305 ~ 71291859 (+) True G32379
XR_002649768.1 lncRNA downstream 352115 71457906 ~ 71462877 (+) True LOC111191996
TU43666 lncRNA downstream 1043484 72149275 ~ 72149476 (+) True G32535
TU43670 lncRNA downstream 1044777 72150568 ~ 72150791 (+) True G32539
XM_022665798.1 mRNA upstream 6696 71088840 ~ 71096529 (+) True LOC103039880
XM_022665740.1 mRNA upstream 251259 70826240 ~ 70851966 (+) True disp1
XM_007255627.3 mRNA upstream 251259 70826240 ~ 70851966 (+) False disp1
XM_007255629.3 mRNA upstream 251259 70827227 ~ 70851966 (+) False disp1
XM_007255631.3 mRNA upstream 281933 70777869 ~ 70821292 (+) True LOC103037005
XM_022665824.1 mRNA downstream 840 71106631 ~ 71113908 (+) True LOC103046432
XM_007242524.3 mRNA downstream 880 71106671 ~ 71113908 (+) False LOC103046432
XM_007239526.3 mRNA downstream 86029 71191820 ~ 71256074 (+) True suco
XM_007239533.3 mRNA downstream 172527 71278318 ~ 71286026 (+) True scrn2
XM_022665873.1 mRNA downstream 196679 71302470 ~ 71314476 (+) False mysm1
TU43208 other upstream 27339 71073848 ~ 71075886 (+) True G32198
TU43152 other upstream 235582 70856811 ~ 70867643 (+) False G32151
TU43083 other upstream 463486 70639083 ~ 70639739 (+) False G32105
TU42949 other upstream 774197 70303036 ~ 70329028 (+) True G32009
TU42855 other upstream 903483 70196925 ~ 70199742 (+) False G31939
TU43252 other downstream 31721 71137512 ~ 71141184 (+) True G32225
TU43257 other downstream 61733 71167524 ~ 71169556 (+) True G32229
TU43523 other downstream 858213 71964004 ~ 71980363 (+) False dab1
TU43802 other downstream 1490115 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 2333265 73439056 ~ 73506987 (+) True LOC103030552

Expression Profile