RNA id: TU43245


Basic Information

Item Value
RNA id TU43245
length 408
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G32219
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71129690 ~ 71132041 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACATGGATGGCGCTATGCTGGTTAAATTAGTAGGTTCtagggtttgataacagatgaatgGCGTTGTGAtgattagattagtaggttctatTAGtaggtttgataacagatggacggtgctgtgctggttagattagtagattctgAGGTTtcataacagatggatggtgctgtgctggttagattagtaggttctggggtttgataacagatggatggtgctgtgctgattTGATTATTAGGTTTTGGGGTTTGATTATAGATgcatggtgctgtgctggttagattagtaggttcggGGGGTTGATTACAGATGGacggagctgtgctggttagattagtaggttttggggtttgattacagatggacggtgctgtgctggttagattagtaggttttggggtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43233 lncRNA upstream 23899 71103225 ~ 71105791 (+) True G32210
TU43180 lncRNA upstream 169933 70945974 ~ 70959757 (+) True G32174
TU43154 lncRNA upstream 262181 70856811 ~ 70867509 (+) True G32151
TU43137 lncRNA upstream 333587 70794559 ~ 70796103 (+) True G32139
TU43106 lncRNA upstream 448901 70679993 ~ 70680789 (+) True G32120
TU43477 lncRNA downstream 129264 71261305 ~ 71291859 (+) True G32379
XR_002649768.1 lncRNA downstream 325865 71457906 ~ 71462877 (+) True LOC111191996
TU43666 lncRNA downstream 1017234 72149275 ~ 72149476 (+) True G32535
TU43670 lncRNA downstream 1018527 72150568 ~ 72150791 (+) True G32539
TU43688 lncRNA downstream 1110444 72242485 ~ 72242811 (+) True G32556
XM_022665824.1 mRNA upstream 15782 71106631 ~ 71113908 (+) True LOC103046432
XM_007242524.3 mRNA upstream 15782 71106671 ~ 71113908 (+) False LOC103046432
XM_022665798.1 mRNA upstream 33161 71088840 ~ 71096529 (+) True LOC103039880
XM_022665740.1 mRNA upstream 277724 70826240 ~ 70851966 (+) True disp1
XM_007255627.3 mRNA upstream 277724 70826240 ~ 70851966 (+) False disp1
XM_007239526.3 mRNA downstream 59779 71191820 ~ 71256074 (+) True suco
XM_007239533.3 mRNA downstream 146277 71278318 ~ 71286026 (+) True scrn2
XM_022665873.1 mRNA downstream 170429 71302470 ~ 71314476 (+) False mysm1
XM_022665866.1 mRNA downstream 171275 71303316 ~ 71314476 (+) True mysm1
XM_022665877.1 mRNA downstream 171888 71303929 ~ 71314476 (+) False mysm1
TU43208 other upstream 53804 71073848 ~ 71075886 (+) True G32198
TU43152 other upstream 262047 70856811 ~ 70867643 (+) False G32151
TU43083 other upstream 489951 70639083 ~ 70639739 (+) False G32105
TU42949 other upstream 800662 70303036 ~ 70329028 (+) True G32009
TU42856 other upstream 929948 70196925 ~ 70199742 (+) False G31939
TU43252 other downstream 5471 71137512 ~ 71141184 (+) True G32225
TU43257 other downstream 35483 71167524 ~ 71169556 (+) True G32229
TU43523 other downstream 831963 71964004 ~ 71980363 (+) False dab1
TU43802 other downstream 1463865 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 2307015 73439056 ~ 73506987 (+) True LOC103030552

Expression Profile