RNA id: TU43322


Basic Information

Item Value
RNA id TU43322
length 1883
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G32267
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70748226 ~ 70750818 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAAATGCAGTCAGATGTCTTTATTATTAACTGTCAATTTACAAGTAGCAGTAGTGcatgagtaaatgagtgagagTTGAGTGCATTAAATCTTATTGAAAGCTGCTACATCCACACTCTGGACCTGCAAAAGAAGACACACCAGTAAGGGTACACACACTGATTGGGTGGAAACGCACAAAATCTATAAATGATGTGCGTTTAATGAGTTAATATTCCTTTTAATTCATTCAGGTGTCTGCATTCTTTACTTACATAGTCTTCAAATTTGGTGATTTCTTCTTCCAGCAGGTCCGTTCCCACCTTGTCATCCTCCACCACACAATTAATCTGCAACTTCTTAATACCGTAACCAACAGGTACCAGCTTAGAGGCTCCCCATAGCAATCCATCGACCTGTACCGACCTCACACACTCTTCTAGTTTTGCCATGTCAGTCTCGTCATCCCACTGCACAATGTAATATACACAGAAACAGAGTGAGGAAGTTTAAGAGAAAAAGGTCACATGTTAACAGCATACACACTTGTCATCAAAGCACATTTTTTAGAATGCTTTAGTTACAGTCAGTGTTTAAGCTCTAGCATGCGATACAATTTTGCTCATTCATTTATGCAACAATATCTGCACATACAGGTTTGACATCCAACAGGATGGAGGATTTGGCGATAAGAGCAGGCTTTTTGGCCTTTCTGGCGGCGTATTCCTGCAGCCGCTGCTCTTTCAATCGTTCTGCCTCTTCGTCCACCTCATCGTCACTACCAAACAGGTCAACATCATCGTCATCCTCTTCATCATCGTCTTTTGTTGGAGCAGATGTTTTCTGGGGAGGTGGAGTGGCTTTCTGtggaaaaacagataaaaaaaatctgagaaaaattTCATGTTTTTGGTACAGTACTCTTAGACTGTGTACTCACAGTAAGTATTCACATTAGAAGCAATAAGTATTTACATTAGAAGTTCCATTAACCACTGGTGCTGCGTTAGGTGCAGATTTCTTTTCCAGGACAGAGACTCGACTCTCCAGTTTGGAGACTCTGGTTCTCTAGCTCCAGGTTCTTCATACGTGCAATAAGTTCTCCCTGGTCAGCACCGCCGCTTCCTGaggtctacacacacacacacacactttacaacaGTTGAACAAAGCGACTACTACCTACTTTTACACAAAAGCAATGTCTAGGCCTGTGACAATAGTCAGTTTTTATTGGCcgatatatttttctaaaaattaTTGCTATAAATCATTACATGCCACTTGATAATTAAGTagaataataatgcaaataGACAGACTTATAAAAAAGCAACTTCAAATTGTGACTAATGTTACAAAACTCATTCACATTAATGAAATCTTCTCACTAGgtgaacaaaataaacaatactaaattcagcaaaaatgattCATGCTATGCCTACATATCGTAACTAATTGTTACAGGCCTGGTAATGTTATGAGTCTTCAACTTTTCAAAATGAAAGAGTCACACTTATAACTAATCAAACTACACAGAACACAAAAgggcacgcacgcacgcacacacaggaAAAGCCCCTACTGTACACACAAACCTGTGACAATGCAGAAAGAAAACACTGACAGTCAGATGAACATCATCTATCCTCACAATACATTTTACTccttttaaaagatttttcatcttcattaacacaaacacatgcagagACAGAAGGTCTAGAACACAGCATGCACTTCCAGCTCAACTACACTTGGACAAAGTGTGTTCTCACATCggctcacacacacttacagtggAGGTGTGAGAGGAGTTTACAGATTTATGGGCAGAGCCTCTAGTTGGCTGCAAGGTCATCTTCAACTAATAAGGGAGAGAATATTGGTAAGGATAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43317 lncRNA downstream 9747 70736265 ~ 70738479 (-) True G32264
TU43313 lncRNA downstream 21951 70717273 ~ 70726275 (-) True G32261
TU43294 lncRNA downstream 67437 70679941 ~ 70680789 (-) True G32248
TU43052 lncRNA downstream 227302 70514094 ~ 70520924 (-) True G32082
TU43048 lncRNA downstream 227302 70514519 ~ 70520924 (-) False G32082
TU43336 lncRNA upstream 26331 70777149 ~ 70777850 (-) True G32275
TU43342 lncRNA upstream 42484 70793302 ~ 70793864 (-) True G32279
TU43350 lncRNA upstream 66454 70817272 ~ 70817703 (-) True G32285
TU43388 lncRNA upstream 167163 70917981 ~ 70992589 (-) True LOC103033556
TU43391 lncRNA upstream 214198 70965016 ~ 70973557 (-) True G32316
XM_007255638.3 mRNA downstream 104901 70640472 ~ 70643325 (-) True c3h8orf82
XM_022665626.1 mRNA downstream 108300 70622015 ~ 70639926 (-) True naprt
XM_007255641.3 mRNA downstream 128339 70600828 ~ 70619887 (-) True rhpn1
XM_007255642.3 mRNA downstream 159229 70585895 ~ 70588997 (-) True hlx
XM_007255626.3 mRNA upstream 105932 70856750 ~ 70867662 (-) False brox
XM_007255625.3 mRNA upstream 105932 70856750 ~ 70867476 (-) True brox
XM_007255681.3 mRNA upstream 120045 70870863 ~ 70915650 (-) True tshr
XM_022665767.1 mRNA upstream 167658 70918476 ~ 71043182 (-) False LOC103033556
XM_007241837.3 mRNA upstream 303627 71054445 ~ 71060960 (-) True snw1
XR_002649364.1 other downstream 1586322 69145308 ~ 69161904 (-) True sec63
TU42561 other downstream 1919206 68827985 ~ 68829020 (-) False fam84a
TU42459 other downstream 2656645 68091220 ~ 68091581 (-) True G31622
TU42346 other downstream 2885954 67855647 ~ 67862272 (-) True arpc5
trnat-agu_1 other downstream 3089575 67658579 ~ 67658651 (-) True trnat-agu_1
TU43425 other upstream 338057 71088875 ~ 71089461 (-) True G32343
trnat-ugu_81 other upstream 345813 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43449 other upstream 387668 71138486 ~ 71142338 (-) True G32364
TU43617 other upstream 1228242 71979060 ~ 71982053 (-) True G32492
TU43689 other upstream 1490712 72241530 ~ 72242270 (-) True G32557

Expression Profile