RNA id: TU43405


Basic Information

Item Value
RNA id TU43405
length 240
lncRNA type intronic
GC content 0.47
exon number 2
gene id G32327
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71025689 ~ 71028881 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacactacattgctacacactctacactacactgctacacactctacactacactgctgcacactctactctacaccgctgcacactctacactacactgctacacactctacactatactgctacacactctacactacattgctacacactctacactacattgctacacactctacactacattgctacacactctacactacactgctacacactctacactacactgctacacac

Function

GO:

id name namespace
GO:0045861 negative regulation of proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43388 lncRNA downstream 33100 70917981 ~ 70992589 (-) True LOC103033556
TU43391 lncRNA downstream 52132 70965016 ~ 70973557 (-) True G32316
TU43350 lncRNA downstream 207986 70817272 ~ 70817703 (-) True G32285
TU43342 lncRNA downstream 231825 70793302 ~ 70793864 (-) True G32279
TU43336 lncRNA downstream 247839 70777149 ~ 70777850 (-) True G32275
TU43427 lncRNA upstream 62847 71090501 ~ 71093213 (-) True G32344
TU43429 lncRNA upstream 133648 71161302 ~ 71163064 (-) True G32346
TU43471 lncRNA upstream 226686 71254340 ~ 71257890 (-) True G32375
TU43470 lncRNA upstream 226843 71254497 ~ 71257919 (-) False G32375
TU43484 lncRNA upstream 233341 71260995 ~ 71289235 (-) True G32386
XM_007255681.3 mRNA downstream 110039 70870863 ~ 70915650 (-) True tshr
XM_007255626.3 mRNA downstream 158027 70856750 ~ 70867662 (-) False brox
XM_007255625.3 mRNA downstream 158213 70856750 ~ 70867476 (-) True brox
XM_007255638.3 mRNA downstream 382364 70640472 ~ 70643325 (-) True c3h8orf82
XM_022665626.1 mRNA downstream 385763 70622015 ~ 70639926 (-) True naprt
XM_007241837.3 mRNA upstream 26791 71054445 ~ 71060960 (-) True snw1
XM_007241836.3 mRNA upstream 49456 71077110 ~ 71086957 (-) False LOC103038639
XM_007241834.3 mRNA upstream 49456 71077110 ~ 71086957 (-) True LOC103038639
XM_007242523.3 mRNA upstream 71948 71099602 ~ 71105819 (-) True ccnk
XM_007239521.3 mRNA upstream 146575 71174229 ~ 71177206 (-) True pigc
XR_002649364.1 other downstream 1863785 69145308 ~ 69161904 (-) True sec63
TU42561 other downstream 2196669 68827985 ~ 68829020 (-) False fam84a
TU42459 other downstream 2934108 68091220 ~ 68091581 (-) True G31622
TU42346 other downstream 3163417 67855647 ~ 67862272 (-) True arpc5
trnat-agu_1 other downstream 3367038 67658579 ~ 67658651 (-) True trnat-agu_1
TU43425 other upstream 61221 71088875 ~ 71089461 (-) True G32343
trnat-ugu_81 other upstream 68977 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43449 other upstream 110832 71138486 ~ 71142338 (-) True G32364
TU43617 other upstream 951406 71979060 ~ 71982053 (-) True G32492
TU43689 other upstream 1213876 72241530 ~ 72242270 (-) True G32557

Expression Profile