RNA id: TU43477


Basic Information

Item Value
RNA id TU43477
length 1459
lncRNA type sense_over
GC content 0.47
exon number 5
gene id G32379
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71261305 ~ 71291859 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGAATTAAAGTGAGTATCTGTTCTGCAGGCGGAGTCTAGAGCTCCAGAGGCTTCATCTCCTCAGACTTCGCCTCTTTCTGTGGTTTCTGATCCGGAGATCAGCCCACAGCATGTCGACGTTCTTCTGCCGTTTTGCTGCGAGGAAGCACCGATTGCCCACCTgcccaccatcaccaccaccacctacCTAGACACATCCCAGCAGGACGACACTGGCCTTCCCTCACCGACCCGTGGCAGATCTGGTAAACGCCTCACTAACATCTTTAGCAGCATGTTTAGTTGTTTCAGGTCACGTGACCGGGTCGTGGCGCTGGTCGGCGAGGCGGACACACTGCCTGCTGCAAAGAGAGGATGGCTACAGCGCTTCCTGCGTCGCTTCAGGAGGACGTCTAGGAAGGGGTGAAAGGGCTGCCCATACAACATCTGGGAGCatacatacactacatacatacattcattcagcatacatacatacatacacagatagatacatatatagGTAGAgagataaatacatacacacatacttacAAAGGTGGAGAGGTGGCAGGCATTAGGTGTTAGGGGTTTGGGGCAAAGTGGGTCACATCTGTGTTGATTAAATTTGGGTTTAGAGGCAATGTGTTGAGGTCATGATATAGTTGACAGGTCTAGTCAGTAGTTGTGCATTCAGAGGGATGAGGTTAGTTGGGGAAGGGCCCAGTGTGTAGACATAAACTGCCTGGTGCACATGATGTTGGGATAGTGGTATAGTTGGGTGTGGTGAGCTTGGAGGGGAGTGAGTCTGGGACGCCAGAATTCACTgctgagccttctggaggtgtcgtaGGCCTAATTCAGCAAAACACTGATGAAGGGAGGTGCCTACCTGATGACCCCTGTGAAGAGCTTGCAGCATAGTGATTGGTGATTTATTGTATGGGTAAAGGGAAGGTaatatatttgatagttgggttaaatgttgctgattggatcataaaCGGCCACAGCAACTTAGTTGTCAGATGTAGGTGCTCGTCATTTTTGTGTAGTTAAAGTTAAATGAATGGGAGAGTAGAGTATACAGGAAAAGGACTGGACTGGGCCCTATATATAACTCCagttgttaggtgcaggattatGTCATCCTCCTGTATTATAacagacacaaacaaacagaaatagaTAGATGCATTGTGTACAGTGTAGAGCAAGTGCAGGGTTCAAATATTAGTAGCGATTGGTTGTTGATTGGACGATTGTTGTTGGCAGGTGTAGGTAGTGAACTATAGGAGATATCTTATGTAGTGAGCTTGGAGGGGAGTGagtctgggacgccagacttcactgcTGAGCCTTCCGGAGGGGTTGTAGGCTTAATTCAGAGAAACTCTGATGAAGGGAGGTGCCTACCTGATGACCCCTGTGAAGAGCTTGCTGCATAAAGGGTGATTAGTGTATGGgtatagattaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43245 lncRNA upstream 129264 71129690 ~ 71132041 (+) True G32219
TU43233 lncRNA upstream 155514 71103225 ~ 71105791 (+) True G32210
TU43180 lncRNA upstream 301548 70945974 ~ 70959757 (+) True G32174
TU43154 lncRNA upstream 393796 70856811 ~ 70867509 (+) True G32151
TU43137 lncRNA upstream 465202 70794559 ~ 70796103 (+) True G32139
XR_002649768.1 lncRNA downstream 166047 71457906 ~ 71462877 (+) True LOC111191996
TU43666 lncRNA downstream 857416 72149275 ~ 72149476 (+) True G32535
TU43670 lncRNA downstream 858709 72150568 ~ 72150791 (+) True G32539
TU43688 lncRNA downstream 950626 72242485 ~ 72242811 (+) True G32556
TU43702 lncRNA downstream 1030802 72322661 ~ 72323006 (+) True G32570
XM_007239526.3 mRNA upstream 5231 71191820 ~ 71256074 (+) True suco
XM_022665824.1 mRNA upstream 147397 71106631 ~ 71113908 (+) True LOC103046432
XM_007242524.3 mRNA upstream 147397 71106671 ~ 71113908 (+) False LOC103046432
XM_022665798.1 mRNA upstream 164776 71088840 ~ 71096529 (+) True LOC103039880
XM_007255627.3 mRNA upstream 409339 70826240 ~ 70851966 (+) False disp1
XM_022665873.1 mRNA downstream 10611 71302470 ~ 71314476 (+) False mysm1
XM_022665866.1 mRNA downstream 11457 71303316 ~ 71314476 (+) True mysm1
XM_022665877.1 mRNA downstream 12070 71303929 ~ 71314476 (+) False mysm1
XM_007260655.3 mRNA downstream 24383 71316242 ~ 71339300 (+) True oma1
XM_007260656.3 mRNA downstream 24383 71316242 ~ 71339300 (+) False oma1
TU43257 other upstream 91749 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 120121 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 185419 71073848 ~ 71075886 (+) True G32198
TU43152 other upstream 393662 70856811 ~ 70867643 (+) False G32151
TU43083 other upstream 621566 70639083 ~ 70639739 (+) False G32105
TU43523 other downstream 672145 71964004 ~ 71980363 (+) False dab1
TU43802 other downstream 1304047 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 2147197 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 2698646 73990505 ~ 73992259 (+) False selp

Expression Profile