RNA id: TU43618


Basic Information

Item Value
RNA id TU43618
length 2676
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G32492
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71970504 ~ 71982053 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATACGCAAaatcaagaagaaaaaaaaaagaaaacaacaaggaaAAATCCTCTAAAAATCACTGTAGAATGTCATCTTCATtgagataaaaaataatgtgtccttttacattaacaaacCATTAGCTGAGGTAAAGTTAAAATAGGTCTAGAAACATACTCAGAACTGTTATGATTTCCCATCCTCTTCCGGCTTCACAATCTCGTTTTTTTAATCTGGAATTTAGTGTATGATCTTTAAAGGGCCAACATGGCTCTCAAATTAAAATGGGACTCTGGCCATAAAATAGCAAGTATTAAATCATTGCACCATCATTGCAGGTGATGGAATGACTGCTGACGTCACCGAAACAAATGCCGTTCACAGCGAGACTCTCCGATTTGATTTTGGATACCAGGATAAAGAATGGTGGATTTTTCGTGTTGTGTTCGTTTTAAGTGAATTAACACTAAATTGTACATGGATCAACGCTGGCGGCTCTGGAGAGGAGGAACACATCAGGATTAAGAGTGTCCTAAAGTCTCGCCATTGATTTTGAAGAGTGTGTAAACATctttgtgtgagtgagtgaataaatgtatatgtatatgtatagggGGTGAATGTTTTAGCGTTTGCTGTAGtacgtatgtatgtattttggtGACACATAAGTCGAATCTaaggctattaaaaaaaaaatcatgtttccTCTAAACAGTAATCTTTAGGGCAGGAGAGCCTGAGAATGAGAATCACTAAATTCTCACTCAGTTCAATCAATAATCAGGTGATCTACTGGAGGTGATCATAGAACAGGGAAATCTAAGTGTGCTTGGGAGATGCATGTCGATATGTACGCTGTGATTTCTTTTCCACCGTTTTGCTACCTTAAATTTGTTTCCCGAACTTGTCAGTTATCGACTCTGACACTCGCTTCTTCAGCATGCTTCTTCTGGTGACTTCTGGGATCCCCATTGGAGGCACTGCCTCCATCAGTATTTGAGGGACTCTGCTGAGAAGAGACATACTCTGACTTGGACAgcaacataaaactattatGAGATAGAGGGATAGTGGGTGTGTGGGTAGTTGGTGGGGGTGGGTTGGGGTTTGGACACATGTTGATATTGCTTGGGTTCCATTTCGAGCTTGCATCACTGAAGCCTGCCTATTTTATGGCACAGACGTCCGGCGGACAGAATGAACACTTATCGTCGTTatcattattgttattgttattattattattattattattattatttacaaaatgaGTTTGGCAAACCAATGATCTGATGCCTTAAAGCCATGTTCACCCCTAAACCGCATCTCAGGTCGACCTCAAGGGCTCCACtgacttataaaataaaaatcccaTTTTTCAATGtcatggtttgtttgtttgttcgtttttttgttttcttctcatTAGTATTGTACAAAAGCTATAGATAAGGAACAGTTCAGTCACAGATTCAGCTTGTTTTTGCAACGTCCATGCCCTTGCAAAGTCCTCTCCGTCTGAATGAGCTGCTCAGAAGTCTTTCCCACAAAAGAGAGATTTTGGCAAAGTCACTCCTTGAGTCTGGTCTCTGTCTGAAGggtccagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagacaaagtctcttgtttttttttttttttttagttctgcaTAGCTCTCTAGCAGCAGAATCTCAAATAGATGGCGGAGGGAAACCAAACAAACCCAAATGGATGAATCACTTAATCCCATCGATGGATCCAAATGGATTATTCTGTAATCGATTGCTCTGGCTTGGACTACACGAGTGGGGGATGACAGTGCGGAGCTGGGATTCTGCTGGATCATGAAGCAGTGATTTGTTGAACTCTTgggtgtgcgtgcgtgtgtgtacaCTGGAATGAGGCATCTCTCCGAAATTCCACTCATACTACACACGGCCTCATTACAGAGTCTTGTAGAGACTGCATGAAagggagagtgagaaagaaggGCCgacagtaagagaaagagagagagagagcgaaagagagacacagagagccagaaaaaaaaaaacaacaaaaaaaaacaaaaagagaggcTGCAGAACAGGGCTAGTAAGGCTGTGAGGGGTGAAGAAGAGTTGAttcctcctcctcatcatcttcatcatcatcatcatcatcgtcattaCGTTAGCTGTGTCTAATGATCCCACTGCCAGTCCATGAGTGCAGGAAACACAGTGTGGCTGAAACAGAGAGGAGTCATTTCCTCCgcaagaggaggagagagagagaaacggtgCGAGAGAAAGCAATAAAAGCGTCCAGTCAGTCGGTGGTtcctccagagagagagagagagagagagagagagagagagagaaagagagagagagagagagagaaagagcaccaGAACACACGGCCACGATGTTGCGAGTGTGTATACGATGGTGGGCGGAGGTGGAGACAGGTGAAGGCGTGCTGATGGACATCACGGTTGGAGCAGGCCACCGACACGCAGAAGAGCAGGAGAAGGGAGAAGAGGACAGATACCTACCCCTGACCTGCTGCTATCTAGCTACCGACCTGAGGACTGTCCGGCTCTGAGCCTTCACACTCTGCCTGAGGCTCACTCACACACGGAGACTGAGCATCTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43484 lncRNA downstream 681269 71260995 ~ 71289235 (-) True G32386
TU43489 lncRNA downstream 690099 71279620 ~ 71280405 (-) True G32389
TU43470 lncRNA downstream 712585 71254497 ~ 71257919 (-) False G32375
TU43471 lncRNA downstream 712614 71254340 ~ 71257890 (-) True G32375
TU43429 lncRNA downstream 807440 71161302 ~ 71163064 (-) True G32346
TU43652 lncRNA upstream 99661 72081714 ~ 72084284 (-) True G32524
TU43667 lncRNA upstream 167530 72149583 ~ 72149787 (-) True G32536
TU43669 lncRNA upstream 167767 72149820 ~ 72150284 (-) True G32538
TU43697 lncRNA upstream 325343 72307396 ~ 72308300 (-) True G32565
TU43699 lncRNA upstream 332288 72314341 ~ 72314797 (-) True G32567
XM_007239522.3 mRNA downstream 780529 71180928 ~ 71189975 (-) True LOC103032944
XM_007239521.3 mRNA downstream 793298 71174229 ~ 71177206 (-) True pigc
XM_007242523.3 mRNA downstream 864685 71099602 ~ 71105819 (-) True ccnk
XM_007241836.3 mRNA downstream 883547 71077110 ~ 71086957 (-) False LOC103038639
XM_007260659.3 mRNA upstream 31202 72013255 ~ 72031640 (-) True prkaa2
XM_007260662.3 mRNA upstream 416738 72398791 ~ 72402415 (-) True bloc1s2
XM_007260664.3 mRNA upstream 516669 72498722 ~ 72518295 (-) True pcsk9
XM_022666060.1 mRNA upstream 540612 72522665 ~ 72527600 (-) True bsnd
XM_015608682.2 mRNA upstream 540612 72522665 ~ 72527444 (-) False bsnd
TU43449 other downstream 828166 71138486 ~ 71142338 (-) True G32364
trnat-ugu_81 other downstream 873801 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43425 other downstream 881043 71088875 ~ 71089461 (-) True G32343
XR_002649364.1 other downstream 2808600 69145308 ~ 69161904 (-) True sec63
TU42561 other downstream 3141484 68827985 ~ 68829020 (-) False fam84a
TU43689 other upstream 259477 72241530 ~ 72242270 (-) True G32557
TU43757 other upstream 545730 72527783 ~ 72542447 (-) True G32611
TU43886 other upstream 715620 72697673 ~ 72698010 (-) True G32714
TU44174 other upstream 1405809 73387862 ~ 73388612 (-) True G32914
TU44213 other upstream 1570362 73552415 ~ 73552883 (-) True G32946

Expression Profile