RNA id: TU43666


Basic Information

Item Value
RNA id TU43666
length 202
lncRNA type inter_gene
GC content 0.67
exon number 1
gene id G32535
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72149275 ~ 72149476 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGCGAAGAAGCCGCTTCAGCGGGAGCtgagagtgcggctgccgccAAGACCCGGACTGGAGCCGCAGATTCAGCAGTGGGCGAGGCTGTGGAAACCGGACCGGAGCTAGCTCCTGGAGCAGGAGTCGAAAACTTGGAATCCGGCCGGGCTGTAGAGCTGGGAGCCGGCAgggcttgagagctgggagccggccgggcttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649768.1 lncRNA upstream 686398 71457906 ~ 71462877 (+) True LOC111191996
TU43477 lncRNA upstream 857416 71261305 ~ 71291859 (+) True G32379
TU43245 lncRNA upstream 1017234 71129690 ~ 71132041 (+) True G32219
TU43233 lncRNA upstream 1043484 71103225 ~ 71105791 (+) True G32210
TU43180 lncRNA upstream 1189518 70945974 ~ 70959757 (+) True G32174
TU43670 lncRNA downstream 1092 72150568 ~ 72150791 (+) True G32539
TU43688 lncRNA downstream 93009 72242485 ~ 72242811 (+) True G32556
TU43702 lncRNA downstream 173185 72322661 ~ 72323006 (+) True G32570
TU43715 lncRNA downstream 213475 72362951 ~ 72363341 (+) True G32579
TU43723 lncRNA downstream 342633 72492109 ~ 72497060 (+) False usp24
XM_007260660.3 mRNA upstream 65030 72036209 ~ 72084245 (+) True plpp3
XM_007260661.3 mRNA upstream 66713 72036206 ~ 72082562 (+) False plpp3
XM_022678518.1 mRNA upstream 151634 71988157 ~ 71997641 (+) True LOC107197929
XM_022665936.1 mRNA upstream 168975 71463100 ~ 71980300 (+) True dab1
XM_022665917.1 mRNA upstream 168975 71463100 ~ 71980300 (+) False dab1
XM_022668194.1 mRNA downstream 57471 72206947 ~ 72208136 (+) True LOC111191956
XM_022666012.1 mRNA downstream 254058 72403534 ~ 72497064 (+) True usp24
XM_022666020.1 mRNA downstream 254058 72403534 ~ 72497064 (+) False usp24
XM_022666024.1 mRNA downstream 254059 72403535 ~ 72497064 (+) False usp24
XM_022666030.1 mRNA downstream 287708 72437184 ~ 72497064 (+) False usp24
TU43523 other upstream 168912 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 979719 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1008091 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1073389 71073848 ~ 71075886 (+) True G32198
TU43152 other upstream 1281632 70856811 ~ 70867643 (+) False G32151
TU43802 other downstream 446430 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 1289580 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1841029 73990505 ~ 73992259 (+) False selp

Expression Profile