RNA id: TU43667


Basic Information

Item Value
RNA id TU43667
length 205
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G32536
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72149583 ~ 72149787 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccccatTATGGACGTAGCAAGGTGGCAGGCTACGAGGAGGGCGGACCTCGAATATCTCCGGTTCCTCGCCGAGCAAATTCGGGGAGATGAACCGCTCCCAGCACCTCTCCTCGGCTTGGAGCTCGTCAGcccagctccagctaagctagctagcctgctagctccaccgcgctctcaagcccggccggcttccagctctcaagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43652 lncRNA downstream 65299 72081714 ~ 72084284 (-) True G32524
TU43618 lncRNA downstream 167530 71970504 ~ 71982053 (-) False G32492
TU43484 lncRNA downstream 860348 71260995 ~ 71289235 (-) True G32386
TU43489 lncRNA downstream 869178 71279620 ~ 71280405 (-) True G32389
TU43470 lncRNA downstream 891664 71254497 ~ 71257919 (-) False G32375
TU43669 lncRNA upstream 33 72149820 ~ 72150284 (-) True G32538
TU43697 lncRNA upstream 157609 72307396 ~ 72308300 (-) True G32565
TU43699 lncRNA upstream 164554 72314341 ~ 72314797 (-) True G32567
TU43703 lncRNA upstream 172877 72322664 ~ 72322979 (-) True G32571
TU43750 lncRNA upstream 213143 72362930 ~ 72363341 (-) True G32604
XM_007260659.3 mRNA downstream 117943 72013255 ~ 72031640 (-) True prkaa2
XM_007239522.3 mRNA downstream 959608 71180928 ~ 71189975 (-) True LOC103032944
XM_007239521.3 mRNA downstream 972377 71174229 ~ 71177206 (-) True pigc
XM_007242523.3 mRNA downstream 1043764 71099602 ~ 71105819 (-) True ccnk
XM_007241834.3 mRNA downstream 1062626 71077110 ~ 71086957 (-) True LOC103038639
XM_007260662.3 mRNA upstream 249004 72398791 ~ 72402415 (-) True bloc1s2
XM_007260664.3 mRNA upstream 348935 72498722 ~ 72518295 (-) True pcsk9
XM_022666060.1 mRNA upstream 372878 72522665 ~ 72527600 (-) True bsnd
XM_015608682.2 mRNA upstream 372878 72522665 ~ 72527444 (-) False bsnd
XM_022666098.1 mRNA upstream 421692 72571479 ~ 72579512 (-) False lexm
TU43617 other downstream 167530 71979060 ~ 71982053 (-) True G32492
TU43449 other downstream 1007245 71138486 ~ 71142338 (-) True G32364
trnat-ugu_81 other downstream 1052880 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43425 other downstream 1060122 71088875 ~ 71089461 (-) True G32343
XR_002649364.1 other downstream 2987679 69145308 ~ 69161904 (-) True sec63
TU43689 other upstream 91743 72241530 ~ 72242270 (-) True G32557
TU43757 other upstream 377996 72527783 ~ 72542447 (-) True G32611
TU43886 other upstream 547886 72697673 ~ 72698010 (-) True G32714
TU44174 other upstream 1238075 73387862 ~ 73388612 (-) True G32914
TU44213 other upstream 1402628 73552415 ~ 73552883 (-) True G32946

Expression Profile