RNA id: TU43670


Basic Information

Item Value
RNA id TU43670
length 224
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G32539
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72150568 ~ 72150791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

Ctgtcaggtgcgggtgcagggaggacgcggaggcggacgcaaatgcaaacaaaaagggatttatttacgaaaacaaatacaaaatacacagggagttactgaaaacaggactgaggaaactggggaacacatagagcactgacagacgataaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43666 lncRNA upstream 1092 72149275 ~ 72149476 (+) True G32535
XR_002649768.1 lncRNA upstream 687691 71457906 ~ 71462877 (+) True LOC111191996
TU43477 lncRNA upstream 858709 71261305 ~ 71291859 (+) True G32379
TU43245 lncRNA upstream 1018527 71129690 ~ 71132041 (+) True G32219
TU43233 lncRNA upstream 1044777 71103225 ~ 71105791 (+) True G32210
TU43688 lncRNA downstream 91694 72242485 ~ 72242811 (+) True G32556
TU43702 lncRNA downstream 171870 72322661 ~ 72323006 (+) True G32570
TU43715 lncRNA downstream 212160 72362951 ~ 72363341 (+) True G32579
TU43723 lncRNA downstream 341318 72492109 ~ 72497060 (+) False usp24
TU43787 lncRNA downstream 414218 72565009 ~ 72595678 (+) False G32630
XM_007260660.3 mRNA upstream 66323 72036209 ~ 72084245 (+) True plpp3
XM_007260661.3 mRNA upstream 68006 72036206 ~ 72082562 (+) False plpp3
XM_022678518.1 mRNA upstream 152927 71988157 ~ 71997641 (+) True LOC107197929
XM_015608685.2 mRNA upstream 170268 71773918 ~ 71980300 (+) False dab1
XM_022668194.1 mRNA downstream 56156 72206947 ~ 72208136 (+) True LOC111191956
XM_022666012.1 mRNA downstream 252743 72403534 ~ 72497064 (+) True usp24
XM_022666020.1 mRNA downstream 252743 72403534 ~ 72497064 (+) False usp24
XM_022666024.1 mRNA downstream 252744 72403535 ~ 72497064 (+) False usp24
XM_022666030.1 mRNA downstream 286393 72437184 ~ 72497064 (+) False usp24
TU43523 other upstream 170205 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 981012 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1009384 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1074682 71073848 ~ 71075886 (+) True G32198
TU43152 other upstream 1282925 70856811 ~ 70867643 (+) False G32151
TU43802 other downstream 445115 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 1288265 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1839714 73990505 ~ 73992259 (+) False selp

Expression Profile