RNA id: TU43688


Basic Information

Item Value
RNA id TU43688
length 327
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G32556
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72242485 ~ 72242811 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCTGTAGCTTTACCAGAGGCAGCCGTCCGGTCTCCCCGGTGTACGGAGTGAGTCTCGAGCTGAATAGCGCTGTCCGGAACTTTATCCGAGAGCCAGGTTTCAGTGAAAATCAGAGCGCAACACTCTCTCATTTCCCGCTGCGATGTAATCCTTGCTCTCAGCTCGTCCAGTTTGTTTTCCAGAGAGCGCACATTAGCTAGCAAGAGGCTAGGCACCGGTGGTCTGCTAGCGCGAGCCTTTAGCCTAGCATGTAGCCCTCCCCTCTTGCCCCGCTTGCGTCGCCGCCTCCGAAGCGCTCTTCTGGGGTCAGCACACGCGCTCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43670 lncRNA upstream 91694 72150568 ~ 72150791 (+) True G32539
TU43666 lncRNA upstream 93009 72149275 ~ 72149476 (+) True G32535
XR_002649768.1 lncRNA upstream 779608 71457906 ~ 71462877 (+) True LOC111191996
TU43477 lncRNA upstream 950626 71261305 ~ 71291859 (+) True G32379
TU43245 lncRNA upstream 1110444 71129690 ~ 71132041 (+) True G32219
TU43702 lncRNA downstream 79850 72322661 ~ 72323006 (+) True G32570
TU43715 lncRNA downstream 120140 72362951 ~ 72363341 (+) True G32579
TU43723 lncRNA downstream 249298 72492109 ~ 72497060 (+) False usp24
TU43787 lncRNA downstream 322198 72565009 ~ 72595678 (+) False G32630
TU43786 lncRNA downstream 343689 72586500 ~ 72595678 (+) True G32630
XM_022668194.1 mRNA upstream 34349 72206947 ~ 72208136 (+) True LOC111191956
XM_007260660.3 mRNA upstream 158240 72036209 ~ 72084245 (+) True plpp3
XM_007260661.3 mRNA upstream 159923 72036206 ~ 72082562 (+) False plpp3
XM_022678518.1 mRNA upstream 244844 71988157 ~ 71997641 (+) True LOC107197929
XM_015608685.2 mRNA upstream 262185 71773918 ~ 71980300 (+) False dab1
XM_022666012.1 mRNA downstream 160723 72403534 ~ 72497064 (+) True usp24
XM_022666020.1 mRNA downstream 160723 72403534 ~ 72497064 (+) False usp24
XM_022666024.1 mRNA downstream 160724 72403535 ~ 72497064 (+) False usp24
XM_022666030.1 mRNA downstream 194373 72437184 ~ 72497064 (+) False usp24
XM_007260666.3 mRNA downstream 316546 72559357 ~ 72567455 (+) True dhcr24
TU43523 other upstream 262122 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1072929 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1101301 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1166599 71073848 ~ 71075886 (+) True G32198
TU43152 other upstream 1374842 70856811 ~ 70867643 (+) False G32151
TU43802 other downstream 353095 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 1196245 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1747694 73990505 ~ 73992259 (+) False selp

Expression Profile