RNA id: TU43689



Basic Information


Item Value
RNA id TU43689
length 704
RNA type TUCP
GC content 0.50
exon number 2
gene id G32557
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72241530 ~ 72242270 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GAGACGGCTCACCCTGATGCCGTCATCATCACAGCTGGTGATTTTAATCAGTGCAACCTACGGACTGTATTCCACAATTACTACCAACATGTGGATATTCCTACACGAGATAAAAACACGCTGGATCACGTGTACAGTAATTTGGACAATCAGACCACATCTCCCTATTCCTGTACCCAGCATACAGGCAGAGACTGAAACAGACAACCCCCACAACCAGAACAGTGAAAATATGGACTCCGGAGACTGAGGGCATCCTGCAGGACTGTTTTGCTACAACAGACTGGGATATGTTTGAGGCTGCAGCCACTATGGGGGACTCTTCAATCAACATACAGGAGTATGCTGAGCACGTGTCCGGTTACATCAGCACGTGTGTGGACAACATCGTGCCCACCGTACAGGTGAAGAGGTTCCCCAACCAGAAACCTTGGGTCAACAACCAGGTACGACACATGCTGCGTGCTCGTTCTCTTGCATTCAGATCAGGCAATGAGACTGAGTACAAAGCTGCGAAGTACAAACTGAGGAAGACCATCACAGTGGCCAAGAGGCAGTACAGGGAGAAACTGGATGGCTTCTACTCCACTGCTGATCAAGGAGGATGTGGCAAGGCCTGCAGCACATCACAGACTACAGGAGCACCACCAGCACCATCAGCTCCACAGACAGCCTACCGGATGATCTCAACACATTCTACACCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43669 lncRNA downstream 91246 72149820 ~ 72150284 (-) True G32538
TU43667 lncRNA downstream 91743 72149583 ~ 72149787 (-) True G32536
TU43652 lncRNA downstream 157246 72081714 ~ 72084284 (-) True G32524
TU43618 lncRNA downstream 259477 71970504 ~ 71982053 (-) False G32492
TU43484 lncRNA downstream 952295 71260995 ~ 71289235 (-) True G32386
TU43697 lncRNA upstream 65126 72307396 ~ 72308300 (-) True G32565
TU43699 lncRNA upstream 72071 72314341 ~ 72314797 (-) True G32567
TU43703 lncRNA upstream 80394 72322664 ~ 72322979 (-) True G32571
TU43750 lncRNA upstream 120660 72362930 ~ 72363341 (-) True G32604
TU43752 lncRNA upstream 123260 72365530 ~ 72365737 (-) True G32606
XM_007260659.3 mRNA downstream 209890 72013255 ~ 72031640 (-) True prkaa2
XM_007239522.3 mRNA downstream 1051555 71180928 ~ 71189975 (-) True LOC103032944
XM_007239521.3 mRNA downstream 1064324 71174229 ~ 71177206 (-) True pigc
XM_007242523.3 mRNA downstream 1135711 71099602 ~ 71105819 (-) True ccnk
XM_007241836.3 mRNA downstream 1154573 71077110 ~ 71086957 (-) False LOC103038639
XM_007260662.3 mRNA upstream 156521 72398791 ~ 72402415 (-) True bloc1s2
XM_007260664.3 mRNA upstream 256452 72498722 ~ 72518295 (-) True pcsk9
XM_022666060.1 mRNA upstream 280395 72522665 ~ 72527600 (-) True bsnd
XM_015608682.2 mRNA upstream 280395 72522665 ~ 72527444 (-) False bsnd
XM_022666098.1 mRNA upstream 329209 72571479 ~ 72579512 (-) False lexm
TU43617 other downstream 259477 71979060 ~ 71982053 (-) True G32492
TU43449 other downstream 1099192 71138486 ~ 71142338 (-) True G32364
trnat-ugu_81 other downstream 1144827 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43425 other downstream 1152069 71088875 ~ 71089461 (-) True G32343
XR_002649364.1 other downstream 3079626 69145308 ~ 69161904 (-) True sec63
TU43757 other upstream 285513 72527783 ~ 72542447 (-) True G32611
TU43886 other upstream 455403 72697673 ~ 72698010 (-) True G32714
TU44174 other upstream 1145592 73387862 ~ 73388612 (-) True G32914
TU44213 other upstream 1310145 73552415 ~ 73552883 (-) True G32946
XR_002649482.1 other upstream 1515700 73757970 ~ 73778866 (-) False ak9

Expression Profile