RNA id: TU43699



Basic Information


Item Value
RNA id TU43699
length 457
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G32567
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72314341 ~ 72314797 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ccgaaggtgcgtagaaccctattgtttttgctaagatttttcttcttcttcttcttcttattattattattctttttctcctgtaaaaacagttgtgcagcctaaaccgtaagtcatagagaaatgaaacttggtaggtagatgtaggatcagtgcatctcggtggacaacaaaaatggcaccgattggtcaagtggtggcgctataaacaaggaaattcatttttcacaattttctcaataactcaaaaaccataagacctacattcaaaattcttttttttgatggattccttgggtcaataccaacaactttccaatttggaccatgcacttccgtctatatagattttgtgctaatttgcataatatgcaaaacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaacactcgtgagagcatgcgct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43697 lncRNA downstream 6041 72307396 ~ 72308300 (-) True G32565
TU43669 lncRNA downstream 164057 72149820 ~ 72150284 (-) True G32538
TU43667 lncRNA downstream 164554 72149583 ~ 72149787 (-) True G32536
TU43652 lncRNA downstream 230057 72081714 ~ 72084284 (-) True G32524
TU43618 lncRNA downstream 332288 71970504 ~ 71982053 (-) False G32492
TU43703 lncRNA upstream 7867 72322664 ~ 72322979 (-) True G32571
TU43750 lncRNA upstream 48133 72362930 ~ 72363341 (-) True G32604
TU43752 lncRNA upstream 50733 72365530 ~ 72365737 (-) True G32606
TU43768 lncRNA upstream 164465 72479262 ~ 72482864 (-) True G32620
TU43763 lncRNA upstream 178811 72493608 ~ 72497051 (-) True G32616
XM_007260659.3 mRNA downstream 282701 72013255 ~ 72031640 (-) True prkaa2
XM_007239522.3 mRNA downstream 1124366 71180928 ~ 71189975 (-) True LOC103032944
XM_007239521.3 mRNA downstream 1137135 71174229 ~ 71177206 (-) True pigc
XM_007242523.3 mRNA downstream 1208522 71099602 ~ 71105819 (-) True ccnk
XM_007241834.3 mRNA downstream 1227384 71077110 ~ 71086957 (-) True LOC103038639
XM_007260662.3 mRNA upstream 83994 72398791 ~ 72402415 (-) True bloc1s2
XM_007260664.3 mRNA upstream 183925 72498722 ~ 72518295 (-) True pcsk9
XM_022666060.1 mRNA upstream 207868 72522665 ~ 72527600 (-) True bsnd
XM_015608682.2 mRNA upstream 207868 72522665 ~ 72527444 (-) False bsnd
XM_022666098.1 mRNA upstream 256682 72571479 ~ 72579512 (-) False lexm
TU43689 other downstream 72071 72241530 ~ 72242270 (-) True G32557
TU43617 other downstream 332288 71979060 ~ 71982053 (-) True G32492
TU43449 other downstream 1172003 71138486 ~ 71142338 (-) True G32364
trnat-ugu_81 other downstream 1217638 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43425 other downstream 1224880 71088875 ~ 71089461 (-) True G32343
TU43757 other upstream 212986 72527783 ~ 72542447 (-) True G32611
TU43886 other upstream 382876 72697673 ~ 72698010 (-) True G32714
TU44174 other upstream 1073065 73387862 ~ 73388612 (-) True G32914
TU44213 other upstream 1237618 73552415 ~ 73552883 (-) True G32946
XR_002649482.1 other upstream 1443173 73757970 ~ 73778866 (-) False ak9

Expression Profile