RNA id: TU43702


Basic Information

Item Value
RNA id TU43702
length 346
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G32570
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72322661 ~ 72323006 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttgttttaaaatgtcctggtattttagagcattcatgatgccatgcaccctaacaaggttcccagggcctttagaagagaaacaggcccacagcatcactgatcccccgctgtatttcacagtgggcatgaggtgcttttctgcatactcagctcttgtgttacgccagacccacttagagcatttgttgccaaaaagctctatctttgtttcatctgaccaaagcacacggccccagttgaagtcccagtaccgcttagcaaactccaaacgtttgcgtttatgattgtgagtgagaaatggtttcttccgtgcatgcctcccaaacagcttgttggcatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43688 lncRNA upstream 79850 72242485 ~ 72242811 (+) True G32556
TU43670 lncRNA upstream 171870 72150568 ~ 72150791 (+) True G32539
TU43666 lncRNA upstream 173185 72149275 ~ 72149476 (+) True G32535
XR_002649768.1 lncRNA upstream 859784 71457906 ~ 71462877 (+) True LOC111191996
TU43477 lncRNA upstream 1030802 71261305 ~ 71291859 (+) True G32379
TU43715 lncRNA downstream 39945 72362951 ~ 72363341 (+) True G32579
TU43723 lncRNA downstream 169103 72492109 ~ 72497060 (+) False usp24
TU43787 lncRNA downstream 242003 72565009 ~ 72595678 (+) False G32630
TU43786 lncRNA downstream 263494 72586500 ~ 72595678 (+) True G32630
TU43805 lncRNA downstream 303390 72626396 ~ 72626685 (+) True G32644
XM_022668194.1 mRNA upstream 114525 72206947 ~ 72208136 (+) True LOC111191956
XM_007260660.3 mRNA upstream 238416 72036209 ~ 72084245 (+) True plpp3
XM_007260661.3 mRNA upstream 240099 72036206 ~ 72082562 (+) False plpp3
XM_022678518.1 mRNA upstream 325020 71988157 ~ 71997641 (+) True LOC107197929
XM_022665947.1 mRNA upstream 342361 71857945 ~ 71980300 (+) False dab1
XM_022666012.1 mRNA downstream 80528 72403534 ~ 72497064 (+) True usp24
XM_022666020.1 mRNA downstream 80528 72403534 ~ 72497064 (+) False usp24
XM_022666024.1 mRNA downstream 80529 72403535 ~ 72497064 (+) False usp24
XM_022666030.1 mRNA downstream 114178 72437184 ~ 72497064 (+) False usp24
XM_007260666.3 mRNA downstream 236351 72559357 ~ 72567455 (+) True dhcr24
TU43523 other upstream 342298 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1153105 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1181477 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1246775 71073848 ~ 71075886 (+) True G32198
TU43152 other upstream 1455018 70856811 ~ 70867643 (+) False G32151
TU43802 other downstream 272900 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 1116050 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1667499 73990505 ~ 73992259 (+) False selp

Expression Profile