RNA id: TU43715


Basic Information

Item Value
RNA id TU43715
length 391
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G32579
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72362951 ~ 72363341 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTCCGCAGAAGGTATAGCGACCGACCCTGATAAGGTagaagctgtgaagcagtggccAGTACCTACCACTCTGAAAGCTTTACGCTCATTCTTAGGGTTCTGTAGCTATTACCGAAGATTCGTGCAGGGGTTTTCAAAGATAGCTGGTCCACTGCATGATCTGGTAAATAACTGTCTAATGGTTGGACCTCCCTCTAGAGTAAATGAGCGGTTGTTGAGCTTATGGAGTACTGAGTGTCAGACctcttttgatgttttaaaggaAAAGCTGGTTAGTGCTCCGGTGCTTGGGTTTGCAGACTTCACTTGCCCTTTCACTGTAGAGACAGATGCGAGTAGCCACGGTTTAGGAGCTGTCTTATGTCAGCAACAGGATGGTAAAAGGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43702 lncRNA upstream 39945 72322661 ~ 72323006 (+) True G32570
TU43688 lncRNA upstream 120140 72242485 ~ 72242811 (+) True G32556
TU43670 lncRNA upstream 212160 72150568 ~ 72150791 (+) True G32539
TU43666 lncRNA upstream 213475 72149275 ~ 72149476 (+) True G32535
XR_002649768.1 lncRNA upstream 900074 71457906 ~ 71462877 (+) True LOC111191996
TU43723 lncRNA downstream 128768 72492109 ~ 72497060 (+) False usp24
TU43787 lncRNA downstream 201668 72565009 ~ 72595678 (+) False G32630
TU43786 lncRNA downstream 223159 72586500 ~ 72595678 (+) True G32630
TU43805 lncRNA downstream 263055 72626396 ~ 72626685 (+) True G32644
TU43885 lncRNA downstream 334108 72697449 ~ 72697765 (+) True G32713
XM_022668194.1 mRNA upstream 154815 72206947 ~ 72208136 (+) True LOC111191956
XM_007260660.3 mRNA upstream 278706 72036209 ~ 72084245 (+) True plpp3
XM_007260661.3 mRNA upstream 280389 72036206 ~ 72082562 (+) False plpp3
XM_022678518.1 mRNA upstream 365310 71988157 ~ 71997641 (+) True LOC107197929
XM_022665947.1 mRNA upstream 382651 71857945 ~ 71980300 (+) False dab1
XM_022666012.1 mRNA downstream 40193 72403534 ~ 72497064 (+) True usp24
XM_022666020.1 mRNA downstream 40193 72403534 ~ 72497064 (+) False usp24
XM_022666024.1 mRNA downstream 40194 72403535 ~ 72497064 (+) False usp24
XM_022666030.1 mRNA downstream 73843 72437184 ~ 72497064 (+) False usp24
XM_007260666.3 mRNA downstream 196016 72559357 ~ 72567455 (+) True dhcr24
TU43523 other upstream 382588 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1193395 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1221767 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1287065 71073848 ~ 71075886 (+) True G32198
TU43152 other upstream 1495308 70856811 ~ 70867643 (+) False G32151
TU43802 other downstream 232565 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 1075715 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1627164 73990505 ~ 73992259 (+) False selp

Expression Profile