RNA id: TU43888


Basic Information

Item Value
RNA id TU43888
length 285
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G32716
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72701522 ~ 72701806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggtgagcacagaattgcagacacgtgcagatactgataaaacaatacgtttattataaaaataaacagatgtaagacgtggttgatacagaaaatgggtaatcaccagaaaccagagcaatgtagacaaaaccataccataaacgagagacagtccagagttcatacacgagatatccaatgtcagaggtaatccaagaggcagtagtgaaaacacagtccaggtaatacacaagcaatccagtatcagaggcaaaggcaataatcggcgtcgagaaaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43885 lncRNA upstream 3757 72697449 ~ 72697765 (+) True G32713
TU43805 lncRNA upstream 74837 72626396 ~ 72626685 (+) True G32644
TU43787 lncRNA upstream 105844 72565009 ~ 72595678 (+) False G32630
TU43786 lncRNA upstream 105844 72586500 ~ 72595678 (+) True G32630
TU43723 lncRNA upstream 204462 72492109 ~ 72497060 (+) False usp24
TU43921 lncRNA downstream 80017 72781823 ~ 72786363 (+) False sf3b6
TU43953 lncRNA downstream 140045 72841851 ~ 72842494 (+) False G32769
TU43954 lncRNA downstream 140045 72841851 ~ 72842494 (+) False G32769
TU43958 lncRNA downstream 140045 72841851 ~ 72842866 (+) False G32769
TU43959 lncRNA downstream 140045 72841851 ~ 72844221 (+) False G32769
XM_022666138.1 mRNA upstream 22439 72654819 ~ 72679083 (+) True LOC111191362
XM_007245314.3 mRNA upstream 65274 72627240 ~ 72636248 (+) False sirt5
XM_007245317.3 mRNA upstream 65274 72627475 ~ 72636248 (+) True sirt5
XM_007245321.3 mRNA upstream 91340 72604219 ~ 72610182 (+) False LOC103033168
XM_007245378.3 mRNA downstream 41212 72743018 ~ 72777057 (+) True LOC103023468
XM_007245380.3 mRNA downstream 79987 72781793 ~ 72786363 (+) True sf3b6
XM_022666164.1 mRNA downstream 85190 72786996 ~ 72801987 (+) False tdrd6
XM_007245379.2 mRNA downstream 85192 72786998 ~ 72803789 (+) True tdrd6
XM_022666157.1 mRNA downstream 85192 72786998 ~ 72803789 (+) False tdrd6
TU43802 other upstream 104585 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 721159 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1531966 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1560338 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1625636 71073848 ~ 71075886 (+) True G32198
XR_002649475.1 other downstream 737250 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1288699 73990505 ~ 73992259 (+) False selp

Expression Profile