RNA id: TU43921


Basic Information

Item Value
RNA id TU43921
length 909
lncRNA type sense_over
GC content 0.37
exon number 3
gene id sf3b6
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72781793 ~ 72786363 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTGTCGGCTACACGGAAGTGCGTAATCGTGCGCCTGAAGTCAGTGCGTAGTGTGGGAGTTGGTGAGGAGCTCGCTGAGAGTTCAGAGTATCTGTTTAGTTCAGTGTAAAAGCGGAACATTAATCAGGATTTTCGATCATGGCGATGCAAGCAGCGAAACGCGCGAACTGGGAACACACCAGAGACCAGAGGAACTGCCTATGTAGTTTATGAAGACATCTTTGATGCAAAGAATGCCTGTGACCACCTTTCTGGATTTAACGTCTGCAACAGATACTTGGTTGTTTTGTACTACAATGCAAACAGAgCATTCCAGAAAATggacacaaagaaaaaagaagagcagCTGAAACTACTCAAAGAGAAATATGGCATAAATACAGACCCGCCAAagtagttttctcttttttgtttctctgtgcccccccccccccttccactctttctctctcttatattgttttattttttacactgtttaaagcaAGCATAAAGATAAACCCTGAAATTTGTACAGTTAAAAGGAGCATACTCTTTATGTACTTCATATTGTGAAGGTGAAGCAATTTTTTGGGCCAGAATATCATCCCTGTCCAAAGAAAAATGTGTATTCAGAATAGTCGCTTTACAGAGaatgaaaaacttttttttgttttttttttcagtaaaagtcagtttttcattttagacagttctggagcatttctattggtctattcattaaGAAATGCTGACACAGTTTGAAGAACTTCTGTGTTCAAACACAATGTTGGCAAAAATTagatacatgtatttttttggacagcatttgtttaacactgtaagATGTTGGTTAATAAGTGATTTCCGAATGACTTATTGGGATATGTAACCACATACTTTTGTtattaaaatgtctaaattatGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43888 lncRNA upstream 80017 72701522 ~ 72701806 (+) True G32716
TU43885 lncRNA upstream 84058 72697449 ~ 72697765 (+) True G32713
TU43805 lncRNA upstream 155138 72626396 ~ 72626685 (+) True G32644
TU43787 lncRNA upstream 186145 72565009 ~ 72595678 (+) False G32630
TU43786 lncRNA upstream 186145 72586500 ~ 72595678 (+) True G32630
TU43953 lncRNA downstream 55488 72841851 ~ 72842494 (+) False G32769
TU43954 lncRNA downstream 55488 72841851 ~ 72842494 (+) False G32769
TU43958 lncRNA downstream 55488 72841851 ~ 72842866 (+) False G32769
TU43959 lncRNA downstream 55488 72841851 ~ 72844221 (+) False G32769
TU43960 lncRNA downstream 55488 72841851 ~ 72844221 (+) True G32769
XM_007245378.3 mRNA upstream 4766 72743018 ~ 72777057 (+) True LOC103023468
XM_022666138.1 mRNA upstream 102740 72654819 ~ 72679083 (+) True LOC111191362
XM_007245314.3 mRNA upstream 145575 72627240 ~ 72636248 (+) False sirt5
XM_007245317.3 mRNA upstream 145575 72627475 ~ 72636248 (+) True sirt5
XM_007245321.3 mRNA upstream 171641 72604219 ~ 72610182 (+) False LOC103033168
XM_022666164.1 mRNA downstream 633 72786996 ~ 72801987 (+) False tdrd6
XM_007245379.2 mRNA downstream 635 72786998 ~ 72803789 (+) True tdrd6
XM_022666157.1 mRNA downstream 635 72786998 ~ 72803789 (+) False tdrd6
XM_015604831.2 mRNA downstream 29279 72815642 ~ 72822277 (+) True LOC103024428
XM_007245384.3 mRNA downstream 37196 72823559 ~ 72831615 (+) True LOC103025272
TU43802 other upstream 184886 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 801460 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1612267 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1640639 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1705937 71073848 ~ 71075886 (+) True G32198
XR_002649475.1 other downstream 652693 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1204142 73990505 ~ 73992259 (+) False selp

Expression Profile