Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007245380.3 |
| length | 1058 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 4 |
| gene id | sf3b6 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035899.1 |
| NCBI id | CM008302.1 |
| chromosome length | 74127438 |
| location | 72781793 ~ 72786363 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0006739 | NADP metabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | cellular_component |
| GO:0003960 | NADPH | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0070402 | NADPH binding | molecular_function |
| GO:0048038 | quinone binding | molecular_function |
| id | description |
|---|---|
| K12833 | SF3B14; pre-mRNA branch site protein p14 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU43888 | lncRNA | upstream | 79987 | 72701522 ~ 72701806 (+) | True | G32716 |
| TU43885 | lncRNA | upstream | 84028 | 72697449 ~ 72697765 (+) | True | G32713 |
| TU43805 | lncRNA | upstream | 155108 | 72626396 ~ 72626685 (+) | True | G32644 |
| TU43787 | lncRNA | upstream | 186115 | 72565009 ~ 72595678 (+) | False | G32630 |
| TU43953 | lncRNA | downstream | 55488 | 72841851 ~ 72842494 (+) | False | G32769 |
| TU43954 | lncRNA | downstream | 55488 | 72841851 ~ 72842494 (+) | False | G32769 |
| TU43958 | lncRNA | downstream | 55488 | 72841851 ~ 72842866 (+) | False | G32769 |
| TU43959 | lncRNA | downstream | 55488 | 72841851 ~ 72844221 (+) | False | G32769 |
| TU43960 | lncRNA | downstream | 55488 | 72841851 ~ 72844221 (+) | True | G32769 |
| XM_007245378.3 | mRNA | upstream | 4736 | 72743018 ~ 72777057 (+) | True | LOC103023468 |
| XM_022666138.1 | mRNA | upstream | 102710 | 72654819 ~ 72679083 (+) | True | LOC111191362 |
| XM_007245314.3 | mRNA | upstream | 145545 | 72627240 ~ 72636248 (+) | False | sirt5 |
| XM_007245317.3 | mRNA | upstream | 145545 | 72627475 ~ 72636248 (+) | True | sirt5 |
| XM_007245321.3 | mRNA | upstream | 171611 | 72604219 ~ 72610182 (+) | False | LOC103033168 |
| XM_022666164.1 | mRNA | downstream | 633 | 72786996 ~ 72801987 (+) | False | tdrd6 |
| XM_007245379.2 | mRNA | downstream | 635 | 72786998 ~ 72803789 (+) | True | tdrd6 |
| XM_022666157.1 | mRNA | downstream | 635 | 72786998 ~ 72803789 (+) | False | tdrd6 |
| XM_015604831.2 | mRNA | downstream | 29279 | 72815642 ~ 72822277 (+) | True | LOC103024428 |
| XM_007245384.3 | mRNA | downstream | 37196 | 72823559 ~ 72831615 (+) | True | LOC103025272 |
| TU43802 | other | upstream | 184856 | 72595906 ~ 72596937 (+) | True | G32641 |
| TU43523 | other | upstream | 801430 | 71964004 ~ 71980363 (+) | False | dab1 |
| TU43257 | other | upstream | 1612237 | 71167524 ~ 71169556 (+) | True | G32229 |
| TU43252 | other | upstream | 1640609 | 71137512 ~ 71141184 (+) | True | G32225 |
| TU43208 | other | upstream | 1705907 | 71073848 ~ 71075886 (+) | True | G32198 |
| XR_002649475.1 | other | downstream | 652693 | 73439056 ~ 73506987 (+) | True | LOC103030552 |
| TU44367 | other | downstream | 1204142 | 73990505 ~ 73992259 (+) | False | selp |
