RNA id: TU43953


Basic Information

Item Value
RNA id TU43953
length 310
lncRNA type intronic
GC content 0.34
exon number 2
gene id G32769
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72841851 ~ 72844396 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttaggcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacattagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaacacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43921 lncRNA upstream 55488 72781823 ~ 72786363 (+) False sf3b6
TU43888 lncRNA upstream 140045 72701522 ~ 72701806 (+) True G32716
TU43885 lncRNA upstream 144086 72697449 ~ 72697765 (+) True G32713
TU43805 lncRNA upstream 215166 72626396 ~ 72626685 (+) True G32644
TU43787 lncRNA upstream 246173 72565009 ~ 72595678 (+) False G32630
XR_002649470.1 lncRNA downstream 34550 72877044 ~ 72877730 (+) True LOC111191374
TU43992 lncRNA downstream 102320 72944814 ~ 72945464 (+) True G32787
TU44000 lncRNA downstream 138518 72981012 ~ 72984863 (+) True G32793
TU44001 lncRNA downstream 138518 72981012 ~ 72984863 (+) False G32793
TU43982 lncRNA downstream 204508 73047002 ~ 73079574 (+) True G32778
XM_007245384.3 mRNA upstream 10236 72823559 ~ 72831615 (+) True LOC103025272
XM_015604831.2 mRNA upstream 19574 72815642 ~ 72822277 (+) True LOC103024428
XM_007245379.2 mRNA upstream 38062 72786998 ~ 72803789 (+) True tdrd6
XM_022666157.1 mRNA upstream 38062 72786998 ~ 72803789 (+) False tdrd6
XM_022666164.1 mRNA upstream 39864 72786996 ~ 72801987 (+) False tdrd6
XM_007245401.3 mRNA downstream 302156 73144650 ~ 73196220 (+) True cd2ap
XM_022666236.1 mRNA downstream 319194 73161688 ~ 73196220 (+) False cd2ap
XM_015604828.2 mRNA downstream 377032 73219526 ~ 73247185 (+) True opn5
XM_022666270.1 mRNA downstream 596562 73439056 ~ 73506987 (+) False LOC103030552
XM_022666274.1 mRNA downstream 596562 73439056 ~ 73506987 (+) False LOC103030552
TU43802 other upstream 244914 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 861488 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1672295 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1700667 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1765965 71073848 ~ 71075886 (+) True G32198
XR_002649475.1 other downstream 596562 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1148011 73990505 ~ 73992259 (+) False selp

Expression Profile