RNA id: TU43992


Basic Information

Item Value
RNA id TU43992
length 228
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G32787
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72944814 ~ 72945464 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtagttctgtagctgtagttttgtcagtgtgtgtaggtgtgtagctgtagttctgtcagtgtgtgtaggtgtgtagctgtagttctgtcagtgtgtgtaggtgtgtagctgtagttctgtcagtgtgtgtagctgtagttctgtcagtgtgtgtagttctgtagctgtagttttgtcagtgtgtgtaggtgtgtagctgtagttctgtcagtgtgtgtaggtgtgtag

Function

GO: NA

KEGG:

id description
ko04971 Gastric acid secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649470.1 lncRNA upstream 67084 72877044 ~ 72877730 (+) True LOC111191374
TU43967 lncRNA upstream 100418 72841851 ~ 72844396 (+) False G32769
TU43960 lncRNA upstream 100593 72841851 ~ 72844221 (+) True G32769
TU44000 lncRNA downstream 35548 72981012 ~ 72984863 (+) True G32793
TU44001 lncRNA downstream 35548 72981012 ~ 72984863 (+) False G32793
TU43982 lncRNA downstream 101538 73047002 ~ 73079574 (+) True G32778
TU44014 lncRNA downstream 116241 73061705 ~ 73062665 (+) True G32806
TU44108 lncRNA downstream 199188 73144652 ~ 73158991 (+) False cd2ap
XM_007245386.3 mRNA upstream 97000 72833413 ~ 72847814 (+) True LOC103025777
XM_007245384.3 mRNA upstream 113199 72823559 ~ 72831615 (+) True LOC103025272
XM_015604831.2 mRNA upstream 122537 72815642 ~ 72822277 (+) True LOC103024428
XM_007245379.2 mRNA upstream 141025 72786998 ~ 72803789 (+) True tdrd6
XM_007245401.3 mRNA downstream 199186 73144650 ~ 73196220 (+) True cd2ap
XM_022666236.1 mRNA downstream 216224 73161688 ~ 73196220 (+) False cd2ap
XM_015604828.2 mRNA downstream 274062 73219526 ~ 73247185 (+) True opn5
XM_022666270.1 mRNA downstream 493592 73439056 ~ 73506987 (+) False LOC103030552
XM_022666274.1 mRNA downstream 493592 73439056 ~ 73506987 (+) False LOC103030552
TU43802 other upstream 347877 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 964451 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1775258 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1803630 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1868928 71073848 ~ 71075886 (+) True G32198
XR_002649475.1 other downstream 493592 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1045041 73990505 ~ 73992259 (+) False selp

Expression Profile