RNA id: TU44014


Basic Information

Item Value
RNA id TU44014
length 867
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G32806
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73061705 ~ 73062665 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGACgtatcaattaaattatttcttttcagGTACGTTGCTAGTCTACGTGCAACCACACTAAAGAAGATCTTACCCTCCACATTCAACAAGCTTATGGGACGGAACTGATCAATAGCCACAGAATCCTTTTCTTTTGGGATAAGAACACCACCTGCTCTGCGCCACTCCTTTGGAATAATCCCCTTCTTCCACACTATAGCCATTAGTTTCCATAGAAACTTCAAAACATCTGGTGCActtttatataatctatatgGAACCCCATTTGGCCCTGGGGCAGAACCTGCctttgcagccttcaccacctccTGAACCTCACTCCACCTAGGGGGGTTAACATCCATCTTCCACTCTATATCACCTAACATCGGCATGTCTGCTGGTAGGTCCAGGTCGCTAGACCTTTCCTTCTCTGTGTAAACACTCTTAAAGTGCTCCTCCAACTCCCTCTTTCCGACCTTTAGATTTCCTGATTTCTCCTTACTAAACAGACTCTTAACAAACCTAAATGGATCTCTAAAGAACTCTATCCTAGCACgctccttcttcttcctccttttcctcaTAGCCTCTGCTCTCCGCAATTTTACCAACTTACTTCTCAACTCCTCCTGCAATAACTCAATgccctctctttctgcctcattCCCCTTCTTCCACTTCTTTCTGAGTAACCTTGATTCCTTAACCAGTTTTTCTATTTCTACCTGCCGCCTTGATTTAACTACATCTTGACACTTTACGTTCCTCTGCACAACACCAAATCTTGCCATTCCATAATCATAAATGACTTTACCTAGCCTGTTCAATTTACTCTCTGCTGTTCCCTTCAAACCCTCAAGCATACCTTTCAAATCATCATTAAT

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44000 lncRNA upstream 76842 72981012 ~ 72984863 (+) True G32793
TU44001 lncRNA upstream 76842 72981012 ~ 72984863 (+) False G32793
TU43992 lncRNA upstream 116241 72944814 ~ 72945464 (+) True G32787
XR_002649470.1 lncRNA upstream 183975 72877044 ~ 72877730 (+) True LOC111191374
TU43972 lncRNA upstream 218654 72841851 ~ 72843051 (+) False G32769
TU44108 lncRNA downstream 81987 73144652 ~ 73158991 (+) False cd2ap
TU44128 lncRNA downstream 199650 73262315 ~ 73264493 (+) True G32885
TU44129 lncRNA downstream 202335 73265000 ~ 73265399 (+) True G32886
TU44154 lncRNA downstream 285532 73348197 ~ 73348620 (+) True G32905
TU44206 lncRNA downstream 479067 73541732 ~ 73541987 (+) True G32939
XM_007245386.3 mRNA upstream 213891 72833413 ~ 72847814 (+) True LOC103025777
XM_007245384.3 mRNA upstream 230090 72823559 ~ 72831615 (+) True LOC103025272
XM_015604831.2 mRNA upstream 239428 72815642 ~ 72822277 (+) True LOC103024428
XM_007245379.2 mRNA upstream 257916 72786998 ~ 72803789 (+) True tdrd6
XM_007245401.3 mRNA downstream 81985 73144650 ~ 73196220 (+) True cd2ap
XM_022666236.1 mRNA downstream 99023 73161688 ~ 73196220 (+) False cd2ap
XM_015604828.2 mRNA downstream 156861 73219526 ~ 73247185 (+) True opn5
XM_022666270.1 mRNA downstream 376391 73439056 ~ 73506987 (+) False LOC103030552
XM_022666274.1 mRNA downstream 376391 73439056 ~ 73506987 (+) False LOC103030552
TU43802 other upstream 464768 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 1081342 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1892149 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1920521 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1985819 71073848 ~ 71075886 (+) True G32198
XR_002649475.1 other downstream 376391 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 927840 73990505 ~ 73992259 (+) False selp

Expression Profile