RNA id: XM_007245401.3


Basic Information

Item Value
RNA id XM_007245401.3
length 4277
RNA type mRNA
GC content 0.44
exon number 19
gene id cd2ap
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73144650 ~ 73196220 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCGCGGAGTTTTGGTGCCGTGTCTGTAGCTAGATGTGTGGCACTAGTTTAGTTTCGGGAAAATCCAAGAAAGGTGGAGACTTGTGGATAACTTCCTTAGCGGTGAACAGGAGAACACAGCGGCGATAAGAGGCGCAGCTGTGGGGCGGTCGACGGGTGGTCTCTCGGGCAGAGGCGAATGGATTTATATCGAGAATAAACTTGGTGGAGAGCAGCTCAGTGGCACGGGGACGCGCGAGCGGGACAGAcagatatacatacatatattatacactGCTAGCATCCAGGTGGCTAGCTAACGTCAGCTATAGGAGGGGAGACAGTCCTGCCTCAAAGAAGGACAGTATGGTTGAAGTGGTGGTGGAGTATGAGTATGAAGCTGCCCATGAAGATGAGTTGACTCTCAGGCAAGGAGACATAATCAAGAATGTTCGGCGAATTGAGGAagagggatggatggaaggTGACCTTAATGGACGAAGAGGCCTTTTCCCAGACAACTTTGTCAAGgaagTAAGAAAAGAACCAGTGAAAGAGGAGGTGAAAGAAGCCAAGGAGGTGAAGGAGGCAAAGGAGACGAAGGAGGTGAAAGAGGTGAAGGAGGTGAAGGAGGTGAAAGAGAATGCGCAACCCCAGCGAAGGTCGGCTGGGAACGTAGCCAGTTTGGTGCAGAGGATCAGCACTTATGGCATCCCAACAGGAGGTCTAGGCTTCCAGCCCCGTTCCTCCAAAAAGAAGAAGAAGCGTCAGTGCAAAGTCGTGTTTGAGTACGTACCCCAGAATGAGGATGAGCTGGAACTGAAGGTGGGCGACATCATCGAAATCACTGAAGAGGTTGAGGAAGGCTGGTGGAGCGGAAGTATGAATGGGAAGTCTGGTCTTTTTCCGTCTAACTTTGTCAAAGAAGTCGAGATGaacgaagaagaagaaatcaGCGATGTTCCCGATGATCCAGACAGTAAAGATGAGGCCATGAGCCCAACTTCTCCTCACCCTGGAAATGGGGTTATTGCACAGCCTAAAAAGGTCAAAGGAGTCGGCTTCGGAGACATTTTCCGAGACTCTGTGAAACTCAAAGTGCGACTGCCGTCAGAGACTGAggacaagaaagaaaaaCCAATTCCATCATTGCCATCTGCTGCTAAGCCCACCAATTTGAGCACATCAGACGCTCAGAAATTGGAGAAAGATGGTGAAAGCAAAGGAAAAGtaAAGGAATACTGCAAGGCTACCTTTGCTTACGAGGCTACGAATCAGGACGAGCTGGATATTAAGGAAGGGGATGTCATTCATTTACTGAGTAAGGACACAGGAGAGCcaggctggtggagaggagaacTGAGTGGAAAACAGGGAGTGTTTCCTGACAATTTCGTGGTGCTGCTGTCAGAGTCAGACAAAGAGCCATTGGCATCCAAAGGCTCTGTTAAACAATCACCCAAACAAGAACCAGAGGAGAAGCCAAAGAAGCCGCCTCCCCCATCCAAATCCACAGTGCTGAAGCCCGAGGTCCCCAGCGCTGAAAGAAAACCTCCACAGCCACGACCTGAAGATAAAGTTGACAGGGCTATTCCAGAAAAACCTGCCAAGCCTGCTGCCCCCATTGTTCCCCCCAAAAAGCCTGTACCCCCTCCAGGCAAAGGACTGATACGTCCAGGATCTTTGACCCCAAAACGTCCAGACAAACCTCTGGCTCCATCTCCAGTAGCTAAGCACAATGGAGAGGTGCCTCACCTTCGACCAAAGTCCGATTTAGAGCCGACGTTACCCAGCAAACCAAAAACCCTGTCGGGAGACTGGGCGGAGAAAGTCGTCGAATCAGATCTCATGAGTTTCGATGATGTCTCCTCTACCTCGGAAAAACTGTCTCATCCAACTACAAGCAGACCAAAGATGCCCGGCAGACGGCTTCCGGCCCAGTTCGGTGGTCACTCCCCAAGCAAGGAGGCCAGTGAGAAAGTTCAGAAaacagaggaagaggaggtTCCAAGACCAAAGTCCTCAGAGTCATGGAAGCCATCCCTCCCAACACCAACACCTGCTGTGCACAATAAAGTGGTCAGCACCTCCACTCCTGAGCCCAAACCAAAAGCTGAGGGTGAGGAGGAAAAAAGAGGCGAGGTGGAGGAGCTCCGGACTCAGCTGAAGGAGTTGGCGCTCTCCATAGAGTTACTAAAGACGCAGCAAACGAGGGAGCTTTCTGAACTGAGAAATGAGCTGGACGAGGAGCGGTTGAAACGGGTGGCCCTTCAGctggagatagagaaattaaaaaagcaGGTACAATCAACGTGAGATCAGCGATCAAGCCTGAAAGCCCTCCTCCTGTCCCTTTGCTGGTGGATGGAAGCCCCCAGAAGTGACGAATATCATTCCCATAATCCTTATAGTCACTGACTTACTCCACAAATTGTAAAATTTACATTTGCACATAATGAGGTTTTTAAGGTATAAAATGGTGTAATTAAGACAGATGTATatgtctttctatctctctctctcttctctctctctctctctctcgctctctctttcactgtgtctctatctctctctttttgtttgcCAACAACGATTGAGGCCTTATTATATACTACTGTGCTGGATATGCAACCTCTGCATTCTTTTGAGAATGTGGCTGAATTTGCAAATTTAATACTACTGAAGCTGTATAAGTAAAGGAGGggattcttttctttatttttatgacattGGGTAGATTTTGTTTCCCTTTTTTAAGCTTTTGTGATTACAGCAATAATCGTTCCATGTTAGCCTCTTTAGATGACTTGGGAATATATGGTGTACTCCTGAtgctttagttatttttttttttcttttttttttctgataatctGTTAAAAGGGAGATAGGCCTgtattatgtttgtttgtttttttattttatttctaacatTCCTATCCAGGGTGACACTATTGTGCCTGTTTTACAAGTGTTAATACTGGGAGCTTTCATTTATATCCTCAGAATTACagtaatgaaaatatatatttatggtcTAGTGATTGcagaaaatggttaaaaactgtaTGTGTTTTATGTATCATGGATGAGTTATTGACTTATTCTCAGATGACAGTTCTTTAAGCAGTAggtgatataatataatataaaaatgactgCTGGTTTAATGATCTCCCCAACACTTCAATACCTTTTCCTGAGCAGATGATCTAATTATCCAGTGTGTAACATAGCAGGCAAGCTAATGCTGTCCAGTGATGATCCAGTCAGGTTTGAATTTAGGACCAGTGTGAACCTAATGTTTCTGACACGGTGGGTGTAGGAGCATCCAGTGGTTGTTCTAGTATGTCTGATTTGCGCTTCACCATCTGCAAAAGAGCAGCATTTTGGAGAGCAGTGGCTCTAATAAATCTGCAGTGATGCCAGAACCAACACAGACCTGTAGCAAAGAAACAGTTTTAGCCAAGGCATTTATCCTAAAAGTTGCATCGTTTCATTCAGATGTTCCACTTCACCCTTGTTTCACCCATGTGTCTGGACAAATGGTGATTAAACCACACCCTACCCACCAGCATCCAACAATTATTAAGTGCTTTTGCTTGCTTGCACAATCCCTCGATCTAAAAGATGGCTTTTCCCGGATTTAAAATCCCTATTCTAAATGCCAAACACTATGGATGGCCTTGTCAACAGACTCTCAGTAGACTGAAGCTGCTGCCACATTAGACTGTATCAATACATATTGGATAGATTTATGTAACCACGTCTGTCTTACTAGCAATTGGACCTTGTTCTTCATTCAAGTACACTAAAAGTGTATCCTTTCCTCAGGCTTCTTATTCCTGTTAAAGCATTCCACATCAGGGACcctgtgtgtgcatgcgtgtctgcgtgcgtgcgtgtgtgcgtgtgtctgcgCGTCAGAAAGCATACAAATCtctgtatgtgtttagttttttttcctcatccCCACCAGAGCAAGATAACATCTAAAACGTTTACAATAAACAAATCCAATGCATCAAACTTGTGTCCAATCCAGATTAAATCCAGATATTCTGCtattcacatatatattttctccACATGAAAGGATCTATGTAAGTGAATTGGCGtaaatacattctttttttttgctttgtttggtTTAGAAACTGATGTGGACATATTCAGCATCTCTCCAAGTGATCTTGTTTACATGATTTTGAACAGACATGCATGAACtgagattttgtttttgtttatttttttttgttccaactgAATAAATatcttttatttacagaacGTGA

Function

GO: NA

KEGG:

id description
K13738 CD2AP; CD2-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43982 lncRNA upstream 65076 73047002 ~ 73079574 (+) True G32778
TU44014 lncRNA upstream 81985 73061705 ~ 73062665 (+) True G32806
TU44000 lncRNA upstream 159787 72981012 ~ 72984863 (+) True G32793
TU44001 lncRNA upstream 159787 72981012 ~ 72984863 (+) False G32793
TU43992 lncRNA upstream 199186 72944814 ~ 72945464 (+) True G32787
TU44128 lncRNA downstream 66095 73262315 ~ 73264493 (+) True G32885
TU44129 lncRNA downstream 68780 73265000 ~ 73265399 (+) True G32886
TU44154 lncRNA downstream 151977 73348197 ~ 73348620 (+) True G32905
TU44206 lncRNA downstream 345512 73541732 ~ 73541987 (+) True G32939
TU44216 lncRNA downstream 374773 73570993 ~ 73571378 (+) True G32949
XM_007245386.3 mRNA upstream 296836 72833413 ~ 72847814 (+) True LOC103025777
XM_007245384.3 mRNA upstream 313035 72823559 ~ 72831615 (+) True LOC103025272
XM_015604831.2 mRNA upstream 322373 72815642 ~ 72822277 (+) True LOC103024428
XM_007245379.2 mRNA upstream 340861 72786998 ~ 72803789 (+) True tdrd6
XM_022666157.1 mRNA upstream 340861 72786998 ~ 72803789 (+) False tdrd6
XM_015604828.2 mRNA downstream 23306 73219526 ~ 73247185 (+) True opn5
XM_022666270.1 mRNA downstream 242836 73439056 ~ 73506987 (+) False LOC103030552
XM_022666274.1 mRNA downstream 242836 73439056 ~ 73506987 (+) False LOC103030552
XM_022666261.1 mRNA downstream 242836 73439056 ~ 73506987 (+) False LOC103030552
XM_022666278.1 mRNA downstream 242836 73439056 ~ 73506987 (+) False LOC103030552
TU43802 other upstream 547713 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 1164287 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1975094 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 2003466 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 2068764 71073848 ~ 71075886 (+) True G32198
XR_002649475.1 other downstream 242836 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 794285 73990505 ~ 73992259 (+) False selp

Expression Profile