RNA id: TU44148


Basic Information

Item Value
RNA id TU44148
length 508
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G32900
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73319644 ~ 73325367 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTAACGgcaggtagtgaggagtgacgcaCGCCGAGTAGAATGTACTCACAGGTTTATTTACAGGCAGGTAAGCAAATGCAGCTAACAGTATAGCCAGGTAAACAAAGATCTCACCAAAGACAGAAGATGGAGTCGTATAAACAGTCCGAGATCGtaaccgagaaacagtccaaccaaacatcaaatccaataagggcaaaacaaaagacattaaCCGgtaatccgaaaacagggtcgtaacgagaaggcaataACAAAGAACAGGAAGAAACCGCTTAGTACGCAACataagtcgacaatacctcgcgaagATACATTACACAGTGCGAccttaaatacagaaaaacagagagcatAACCCGGAtcttcctcagaacacaggtgagtctgagcgccggagcgtaacgtgattgggCGACGGCGAGCGACTGACGGTGACGTCATAACCCAAAGGATTCTGGGAAGTGGAGTCCAGAGGTGTGGAAGGAGAGTCAGGCTGCGTGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44135 lncRNA downstream 56091 73262330 ~ 73263553 (-) True G32891
TU44122 lncRNA downstream 101493 73217900 ~ 73218151 (-) True G32879
TU44113 lncRNA downstream 123500 73178400 ~ 73196144 (-) True G32870
TU44043 lncRNA downstream 305195 72986199 ~ 73014449 (-) False LOC103029909
TU44052 lncRNA downstream 305705 72986199 ~ 73013939 (-) False LOC103029909
TU44151 lncRNA upstream 1000 73326367 ~ 73328154 (-) True LOC111191385
XR_002649474.1 lncRNA upstream 1005 73326372 ~ 73326970 (-) False LOC111191385
TU44203 lncRNA upstream 208294 73533661 ~ 73536104 (-) True G32937
TU44204 lncRNA upstream 208294 73533661 ~ 73536104 (-) False G32937
TU44391 lncRNA upstream 538760 73864127 ~ 73868538 (-) True LOC111191425
XM_007245404.3 mRNA downstream 17618 73271560 ~ 73302026 (-) True ptchd4
XM_007245399.3 mRNA downstream 191956 73091575 ~ 73127688 (-) True tnfrsf21
XM_007245400.3 mRNA downstream 191964 73091575 ~ 73127680 (-) False tnfrsf21
XM_022666211.1 mRNA downstream 237636 73041468 ~ 73082008 (-) True LOC103026697
XM_022678547.1 mRNA downstream 285858 72921906 ~ 73033786 (-) True LOC103029909
XM_007245406.3 mRNA upstream 103801 73429168 ~ 73436214 (-) True spats1
XM_007245407.3 mRNA upstream 278960 73604327 ~ 73609208 (-) True LOC103031805
XM_007245411.3 mRNA upstream 304884 73630251 ~ 73639424 (-) True LOC103032852
XM_022666316.1 mRNA upstream 321802 73647169 ~ 73747910 (-) False enah
XM_022666309.1 mRNA upstream 321802 73647169 ~ 73723113 (-) False enah
TU43886 other downstream 621634 72697673 ~ 72698010 (-) True G32714
TU43757 other downstream 777197 72527783 ~ 72542447 (-) True G32611
TU43689 other downstream 1077374 72241530 ~ 72242270 (-) True G32557
TU43617 other downstream 1337591 71979060 ~ 71982053 (-) True G32492
TU43449 other downstream 2177306 71138486 ~ 71142338 (-) True G32364
TU44174 other upstream 62495 73387862 ~ 73388612 (-) True G32914
TU44213 other upstream 227048 73552415 ~ 73552883 (-) True G32946
XR_002649482.1 other upstream 432603 73757970 ~ 73778866 (-) False ak9
TU44385 other upstream 471096 73796463 ~ 73868538 (-) False LOC111191425

Expression Profile