RNA id: TU44213


Basic Information

Item Value
RNA id TU44213
length 469
RNA type TUCP
GC content 0.52
exon number 1
gene id G32946
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73552415 ~ 73552883 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAGAGGACCTAGTGACCAGACGTCGGACTGCAGACGGAGTTGCAGAGACGGTGGAGTGGAGGACTCAATGCTGCTGGCTGCTGCTGTTCATCTTCCTGGACTGATCCAGAAACCTTATCCTTTATCTGGCAAAGACTATTTTTCCTAAAATGTCTGACCAttcagaggaggagagggacTCTGATGATGGGGTTGAGCCAGAAGAATCGGACATTCAGAAACAAATTGGTGAACTGAACAGAAAACATGCTGTAGCAATGGCAACCATTGATTCCTTGAATAGGATGCCTGATAGAACATATGTCTATGTGCCACGAGAGCGTCACATTGCTCCATTCACTGGTGATTTTGAAAAAGATGGAAGACTAGTAGATGATTTCATTGAGGAAACTGAACGCGTCTTACGTGCACGCAGTCAGTCTCCTCCTGAGCAGTATGACTTTGTTCTCTCTTTGTTGCGAGGGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44203 lncRNA downstream 16311 73533661 ~ 73536104 (-) True G32937
TU44204 lncRNA downstream 16311 73533661 ~ 73536104 (-) False G32937
TU44151 lncRNA downstream 224261 73326367 ~ 73328154 (-) True LOC111191385
XR_002649474.1 lncRNA downstream 225445 73326372 ~ 73326970 (-) False LOC111191385
TU44148 lncRNA downstream 227048 73319644 ~ 73325367 (-) True G32900
TU44391 lncRNA upstream 311244 73864127 ~ 73868538 (-) True LOC111191425
XR_002649487.1 lncRNA upstream 312180 73865063 ~ 73868536 (-) False LOC111191425
XR_002649486.1 lncRNA upstream 312180 73865063 ~ 73868536 (-) False LOC111191425
XR_002649489.1 lncRNA upstream 312323 73865206 ~ 73868536 (-) False LOC111191425
TU44407 lncRNA upstream 330010 73882893 ~ 73884914 (-) True G33076
XM_007245406.3 mRNA downstream 116201 73429168 ~ 73436214 (-) True spats1
XM_007245404.3 mRNA downstream 250389 73271560 ~ 73302026 (-) True ptchd4
XM_007245399.3 mRNA downstream 424727 73091575 ~ 73127688 (-) True tnfrsf21
XM_007245400.3 mRNA downstream 424735 73091575 ~ 73127680 (-) False tnfrsf21
XM_022666211.1 mRNA downstream 470407 73041468 ~ 73082008 (-) True LOC103026697
XM_007245407.3 mRNA upstream 51444 73604327 ~ 73609208 (-) True LOC103031805
XM_007245411.3 mRNA upstream 77368 73630251 ~ 73639424 (-) True LOC103032852
XM_022666316.1 mRNA upstream 94286 73647169 ~ 73747910 (-) False enah
XM_022666309.1 mRNA upstream 94286 73647169 ~ 73723113 (-) False enah
XM_015604835.2 mRNA upstream 94286 73647169 ~ 73714487 (-) True enah
TU44174 other downstream 163803 73387862 ~ 73388612 (-) True G32914
TU43886 other downstream 854405 72697673 ~ 72698010 (-) True G32714
TU43757 other downstream 1009968 72527783 ~ 72542447 (-) True G32611
TU43689 other downstream 1310145 72241530 ~ 72242270 (-) True G32557
TU43617 other downstream 1570362 71979060 ~ 71982053 (-) True G32492
XR_002649482.1 other upstream 205087 73757970 ~ 73778866 (-) False ak9
TU44385 other upstream 243580 73796463 ~ 73868538 (-) False LOC111191425

Expression Profile