RNA id: TU44391


Basic Information

Item Value
RNA id TU44391
length 2423
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC111191425
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73796463 ~ 73868538 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaccCTGATAGCAGACTACTCCGATCCGGATCCGTTTTACCTCCGGCAGATCCGCGCTACAGTCAGGTCTGTTTAGTGGATCTGGTCCGGCTTCACTCCGGGTTCGGGTTATGATTGTGACTCACGTTCAGATCCGTTTTACTGACGGTAAATCCGCATAACAGTCCGTCTCATTTCACGCCTTCCATATGACTTCGGCACGGAGTCAGATACCAGATGTGAGTTCAGTGTCAGTTCAGTGTCGTTTTGCGGATCCGGGCCGCATCGGCGGAGCGGCACAGGAGCGGGAGAAATTCAAACTCAGCGCGAGGACCAACTGACATCTGCTGAATCTGCGCTTCAGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGGTAAGAAATATACATTTCTttccttttaaaacatttgtgttgTTACGTATAATAACAATTACATCAGGCGTTATCAGATCGAGGTTCAaattatcaaatcaaattgttggcggggaccatttaaaaaatcactGGATATTGGTGTCCGTGCTAACTCTATACCCTTGAGTAAAGTAACCAAGTACTAATACTTCATTACTTTTCATCCCTTTGCTTTATCTTAAATGATTGCCACCTTTTGAACTAAAATAATTCCTAATCAGTTGTCTATTCCTgactagaaaactaaaaataacagttttaaatgttttgcttttttttaagctggAGAGAACTACTGCAGGATTTCTCCAGACtcactgtaattacacatggTCACCATGACACACTAAATAGGACAGGGGTGTTTTTCCTGAAAGtgatcaatcttagcgaataacaaacaaactaacgCATGACGTGAgaaaagaacgagccagttcttcAAGTGTTTCCCATAGAGCTTTGCAAAAAGTTCAAAGagcgtctttgttgactcctccccttTGCAATTCCTGTAAATCCTGTATTTCCTTGGGAATTccatataagtgtgtgtatggtgcAGTAACAACTGGGTTACAGAATGCACAGACTTGGAGTCTGCACACTTGCTAAGACCGTGACCATCACCAGTTGTCTGCAGGAAACCACCTGTAGCATAAAATCAGTGGGCAGTTAGGTGGTACATGGTGGAACTCTGTGGAACTGAGTTGACCTAGAggcacacatatatacagtgaggaaaatgAACACCCTGCGACTTTGCAAGTTCTCTCACTTATAAATCATTGAGGGGTCTGAAATTTTCATCTTTGGTGCATGTCCACCGTGAGAGACATAATAAAAATCCGGAAAtcacaatttattattatttttaaataatttatttaatttacaactTTCTCAGCAGGATTTGGTATCCACAAAATGGTTCGAGGTCCTCAGCCCTCGCCTCCCCCAGCACAGAGGAAAACTACCAAGGGCGGTACTCTCATTATAGGAGATTCAATTGTTAGACATTTAAAAGTATCTAAGAGTAATGGCACAATTTCATGTCTTCCAGATGCTTGCATGCTGGTAGTCGGCAAGCGGCTCCCTGGGGCGCATTGCCAAAGCAGGAACCCCGGCACCATCGCCCTCCACGTGGGGATGAGCTTTCGGGAGCGACCGGCCCCGTTCCACAGAGACAGGCTTCTCTCTGTGAACATCGAGGCGGTGCTACGCTGAGACTGACTGTCTCTACCCAGTCACACCAGCCAAGTAGGTTTGTTTGCTGGTATTTCTGCTTGTACTATTTGTATGTCAATTCTTCATAATAGTGTAAATAAAACACGTTATCAAAATAGCTGGAAAATCTGTTTTAACAACTCCATTAGAATTAATACAAACTCGTCTGTCCTTCTGAGTTACAGCAACAACCACATTAAATCGGGGCTGTTAAATATAAGATCGCTGGCACCTAAATCAGTTACTGTAGGTTAAATTATCATTGACAATGCACTCTCTATGAGACATGGGTTAAAACTGATGGATATTTAGCTCTAAATGAGTCCACTCCCCCCAGGTTCTAGCTATTTCATCTACCCATGCAGGACTGGTCAGGGTGGTGGTGTAGTCGTCAGTTATAGGAATAAATCAAAATACAGAGTTTGAAGCTAAGTCATTTGAACTGTTTAACCTTATAGTCGCAGGCCCATCTACTGCCACCAAAACCCAACATTCATTCCTGCTGATAACTATGTACCGTCCTCCAGGACCATATGCAAAATTCACTAAGAAATTCAGTATATTTTTTAGCTGCAGTAGCTCTCAACTCTGACAGAGTTATCATTGTTGGTGACTTTAATATCTATTTTGAAAAGAAACAGGGCCCACTGAGAATagcatttaaatcaattttggATGCATTAGCCTTCAATGAGAATGTAATGGGCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44203 lncRNA downstream 328023 73533661 ~ 73536104 (-) True G32937
TU44204 lncRNA downstream 328023 73533661 ~ 73536104 (-) False G32937
TU44151 lncRNA downstream 535973 73326367 ~ 73328154 (-) True LOC111191385
XR_002649474.1 lncRNA downstream 537157 73326372 ~ 73326970 (-) False LOC111191385
TU44148 lncRNA downstream 538760 73319644 ~ 73325367 (-) True G32900
TU44407 lncRNA upstream 14355 73882893 ~ 73884914 (-) True G33076
TU44430 lncRNA upstream 82374 73950912 ~ 73953542 (-) True G33091
TU44444 lncRNA upstream 123204 73991742 ~ 73992572 (-) True G33099
XM_015604817.2 mRNA downstream 50986 73784007 ~ 73813141 (-) False LOC103034242
XM_007245416.3 mRNA downstream 50986 73784007 ~ 73813141 (-) True LOC103034242
XM_007245413.3 mRNA downstream 85261 73756908 ~ 73778866 (-) False ak9
XM_007245414.3 mRNA downstream 85261 73756908 ~ 73778866 (-) True ak9
XM_022666348.1 mRNA downstream 108611 73749986 ~ 73755516 (-) True ppil6
XM_022666462.1 mRNA upstream 62859 73931397 ~ 73939674 (-) True LOC103035214
XM_022666464.1 mRNA upstream 62859 73931397 ~ 73939479 (-) False LOC103035214
XM_007245427.3 mRNA upstream 87273 73955811 ~ 73970935 (-) True c3h1orf112
XM_007245426.3 mRNA upstream 108653 73977191 ~ 73979734 (-) True LOC103037051
XM_007245496.3 mRNA upstream 157067 74025605 ~ 74043117 (-) True LOC103031184
XR_002649482.1 other downstream 85261 73757970 ~ 73778866 (-) False ak9
TU44213 other downstream 311244 73552415 ~ 73552883 (-) True G32946
TU44174 other downstream 475515 73387862 ~ 73388612 (-) True G32914
TU43886 other downstream 1166117 72697673 ~ 72698010 (-) True G32714
TU43757 other downstream 1321680 72527783 ~ 72542447 (-) True G32611

Expression Profile