RNA id: XM_007229456.3


Basic Information

Item Value
RNA id XM_007229456.3
length 5729
RNA type mRNA
GC content 0.46
exon number 9
gene id nr4a3
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6368118 ~ 6411421 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGCGCATAAATGTGCTATTAGACTTGGAGCGGCTCTCAGCAGCGcggcacataaacacacactcacacacagcccgGGCGCAGAGTGCGAGCTGAGCGCGGCACGGCTCCTCTCTGCTCCCGCACGGACTTACTGCACTCTCACAGAGAGCACTACCAGATCGGGAAAGAGaaggaaagcagagagaaagCTCAAttactttttatctttttttaatgaaaccTCCTCCTTCACTTTGGCTCCTGGAATTACTAGGGCTGTAACATCACATGTAAAGACGGAACCGCTACAGCAATCATCCCCCGGTTCGGAAGAGCGCGTGCAGCCGAGCTGTGAGTCCGAGTCCCAGGACACTTGCAGCGCCGCGCGACCTCAGCCGcgagcatcagcatcagcactAGAGCCCCGCCGCGTGCCCGTCCCGCGCGCCACACCGAGCACGATTCAGCGAGCAAAGGGTCCACCAGaCATGCCCTGCGTTCAGGCCCAGTACGGCCCTGCGCCCCCCGGTTCCAGCTACTCCGCCCAGTCGTTTGGTTATCACAGCGACTACAGTGCTGACCTCATGTCGGACTACGCCAAGTGCGAGCTCGGCGGGGGCGAGATCTCGGCCGCCGCCGCCACCACCTCCCTGCCCAGCTTCAACGTCTTCGTGGAGGGAGGCTTTGAGCCCAAGCCCTCCTGCCTGTACCAGCTGCCCCCTCAGCGGCCCACCAtcaagaaggaggaggagagttACCCTCCCATGTCGGTTTCAGAAGATGCTATAGGCGGCTCCATGTACTTTAAGCAGTCGCCGCCCTCCACGCCCCCCACCCCGCTGCATCCCGGCCCGCCAGGTGCGTCCTCCTTCCTGTGGGAGGAGACTCACCTGCCCCCCGTCCCCCAGCCCTGCCTCATGGAGACCTCCCTGAAGGGTCCTCGTTTTTCCCACTTCTACGAGCCCTCAGCCCCCTCCTCCAGCGGCTACGACACACCCATGGGCCTGCAGCTCCGTCCCGAGCGCTCaccttcatcctcctcctcttcctcacaccCCCCACCCAGCCTGGActctcacgcacacactcacgcgCACGCGCACTCGCACATGTACCCGCTGAACATGGGCAAGCCCATGTTCCGGTCCCTGGGCATGGGCCCGTGCCCGCCCTCACTGCTGGGGGAGAGCCTGCCATCGCCACCCAGCCGGGCCAGCTCCGGGGAGGGCACGTGCGCAGTCTGCGGAGACAACGCGGCTTGCCAGCACTACGGGGTCCGGACGTGCGAGGGCTGCAAAGGCTTCTTTAAGAGGACAGTACAGAAGAACGCCAAGTACGTGTGTCTGGCCAGTAAAAACTGCCCTGTGGACAAAAGGAGACGGAACCGCTGTCAGTACTGCCGCTTCCAGAAGTGTCTCAGTGTGGGCATGGTGAAGGAAGtGGTGCGCACAGATAACCTAAAGGGGAGGAGAGGTCGTCTGCCATCAAAACCAAAGAGTCCGCTCCAGCCCGAGCCgtcacctccatcacctcctcTCAGCCTGCTGAATGCTCTGGTCAGAGCATACTCCCAGTCCATACCCAGAGAACTGGACTACAGCCAGTTCAGCGCTGTAGAGACCGGTGGTCTTGCCGAGGCTCAGCAGATCCAGCTGTTCTACAGAGTGCTAACCGGTTCCATGGAGGTCACGCGCTGCTGGGCAGAGCGCCTGCCAGGATTCTCTGAGCTTCATCCCGACGACCAGAACGTGCTTATAGACTCGGCCTTTCTCGAGCTGTTTGTGCTCCGCCTGGCCAACAGGTCGTTGTTGGCGGAGGAGAAGTTTGTGTTCTGCACAGGGCTGGTGCTCCACAGACTGCAGTGTCTGCGAGGTTTCGGAGAATGGCTCGACTCCATCAGAGACTTCAGCGCCCACCTTCAGAGTCTCAACCTGGACTTACCGGCCTTCTCCTGTCTGTCTGCTCTTGTGTTGCTCACAGAGCAATGCCCCGGCCTCAAAGAGCCCAAGAAGGTAGAGGAGCTGCAGTCCAAACTCATCTGCTGTTTGCGGGAACACCTCAGCTCCGGCGGGGCCGGAGGCGTGGCTGCCGCGAGCAAGGCTCCTCCCTCCACGGCCGCCGTGCTGGGCCTGAGGGCCGAGCTCCGGTCTCAGCGTACTCAAGGCCTCCAGAGGATCTTCTACCTGAAACTGGAGGACTTAGTCCCGCCCCCTCCGCTCATCGACAGGTTCCTGGACACCCTTCCCTACTGATGAGAGAAACGCCCACCAAGCTCACAGACACTCCCACAAATGCTCACTCAGATGGCGGCAGTGCAGGACGCATCACTGAGGGACAGAGCCTGTAGTTGGAAGAGACTCAtgaactacatttcccatgaGACTCTGATGCGGCACTTCGGTGCCACAGGAGCTCAGCCAGAGAAGCGCTTTTTTCACTTTGGCCCTGCACTGGACAATGTAGATGTGTGTGActataaatgagtgtgtgtatgtgtgtgtgcgtttgagTGCGTGTAAGTGTGAGGGAACAAGAGCAGAGCTGTGCTTTTGGACTATGGTTCAGTGTGTCATGGGGAAACATTGTGTTTGcgaatgtgtgtgagtgagagtgtgttgggagtttttttttttttcagtcagaaaGCACCCAGAATGCTTTGCTGCCACTCATGTAGACTAGGAAGGCAATAGCTGTTCAGTCACACATGtacacatcacacacagacCCTCGCTTTCTTGCAAgttaagtgttttaaataattttttcagtgtttttcaataTAATCTGCTTCTGCTGCATCTGTAGAATATGATGGATTTACCACAGATGACAAATTCAGTGTTGTCCACACTTTGGAATAGGGATGCACAATAATATTGGCAGGGTATTTGAAAGAATATTGGCAAGAATATTGGCAATAATTTGGAATCCAGCCCAGCAtgacttacattttaataatgttatacAGGTATGCTAATATAGCGTAAGGATTCTTGCCCTAGGACTTTTATTGGGGTAGTTTGTTGTGTTTAACTGGCTTAGAAACTAAAACGTAGTCTGCCACAGAAGGGTGGCATTGTTACTCAATTTGCACCACTAACCAGATTATTGCTTTAATAAATGATAGATTTCGGACATATATATTTGAGCAGTATTTTAAACCAACGTGTTGACTGGTATTTACTGGGTTATTTCTCAAGTATAGGTAGATGTAGTGCCTACATACctacatttcaacattttttaaaatgttaagcgttaaataataaaagtattggCAAAAACATGCaatatatgaacaaaagtattgaaaGACACGTTTCAAAAAGTAAATCAACTTTAGACTGTAATTGTGGATGCCACCATTGAAACCAGCCAGTTGGTGAAATGTTCCACCTCCTAAATATTCCACCATCAACTCTGAATGAGTTTAAGATCCACAGCAACTCAGCTACGAAGTGTCTGgtaatgtaaagttacagagcacaGAGTCTGAGGAGATGAAGTTTTCAATGCTATGCAGAGTTTAACACCTGCGGTTAGAGATGTAAAGGGGGACCGACTCCACACTAATGCATACAGGTTTAGAACGGGATGCTTACAAGCTTCTGTAGGTGTAATGTGTAGGTTTTCCagtacttttgttcatatagtgtacataaaaatgatcaaatcagCGCAAAATTCTTATAAAGATGCCCATACAATTGCAAACATTAAGCTAATACTTTAGTTTTTATAGCAGCTACAAAGCAATAAAGTCTTAAACATGCAGATTTATCTTAGATTTTCATGGATTCACTCTTAACCAAAAAGGTGCTACAAAGGATGTGTTTGAGTGATGCATCAGAAGAACCCTTTTTggtgaaataaaaacaatttaaattacattaaaaacatttaaaaagttcttcaaacTGACACACGTATTTTATGAAAATGGTTCTTCTGTGGCGTCATGCAATGGACACCCTGTGGATCCATAATTTTTAACCCTGAAATTGACCCCAAAATTTCATagttaaaaatggcaaaaaaatggAGCATAGGTCATTTTCTGCTAGGTTTAGTGTATTGAACATGTAAATGGaaaattacttatttaatatGTTTGTAATCACTTTCAATGCTTATATTATGCAAACAATGTTTGggtcatataaaaaataaatacagaggCTACAGtgggtaaaatatattttatctttaaaacTAAGACAcagattaaaatgaaaaaacagtgAATCAAGGTAAACCTGTtcactttaaaaacataaatttgattactctaaatatttattaaatccaTATTAATTGACAATGTTGTTTTGCATAGTTTAAAATGCACCAGGTCAATTTGGCTCAAAAACATTAGTGCTGTTTCAGAAGGACAAACATATCAGGAGGGATAATGTTTTTTACAGTTGCAGTTAAAAAGTCCTAAGATGTTATCCTTCAATCTgccattatatattaatatatatatatatacagatatattctACAGATGCAGCAGCTAAAGGTCAggttgaaaagctctggaaatgATCCTTGAAGCATCTCTGAAGAAAGCTTTAGACAAACGAATCAACCAGCGTCCGGAGCAGCCAGACAAAAAAAGTGCATTAAATTTTTTAACCACAGAATCACACTCCGTTTCACCCCAGCAAAACAGCATACAAGTGCAATTTACTAAGTGCTATTTAAataggaaaagagaaaaaaaaaacagattagcCAGTGGAGCAGAAAAGGTAgcgaaggaaagaaaaagaaaggaaagaaaagaagggCATGAGTGGATTCCATTTCTATTTCAactctaaattattttaatactaaAGACTCACCTTATGAGGTGAAGGTTTTAAAACCGAGCAGAACAGAGGTTTTGTTTTCTGCGCACTAACTCTTTAATGACCGCGAGTTCCACAAACTTGAAAGgactgtagattttttttgttgttttcataTTCGTTTTCTGGTTTCTGAAAAACCGGAGGTTCATAGAGGTAGGActgtagaataaaataaaaaagagcaggTAAAGGAGGAGGATTTGGGCTACAAGCACTTaaacagtgaaagagaaaaGGGGGGGTGGggatttttgagaaaaaaggaggggaaatgagagagagattggggCGGGAGGAACGAAACATTCCGCGTTCATGCTCATTTTTTGTAAGTTTATATTGTTAATGCCATTTATTAATATGGAGGACTTGTTGCAAAAAGTCTTTTATTTgtacaaaaaggaaaaaaacagactATATGCATGGTTTTCTCTTTCTTGCCTTTTCTGGCCTGTATTTATTTTGCGAAGACCGCCGGCTCCTGAAGGGCTTGGACACGTTCATCACCAacttgggcttttttttttttttttgctaacgTCGCCCAACAGGCGACACTTTTGAGACGAGATGGAAGAAGtacaaattatataaatatataaatatatatatatatatatatatatacacacgagacaaaactaatattttgaagtgtttttatCCGATAGCTTTTTCAAATCTTGTGGTACGAGTtgtgcatctgtttttttttttgtttatttgtttgtttttttcttttggagaaagaaacaagatgacaaaaaagaaaaaaaaatctatgtctcttctggtttgtttagattatttcttttttttctctttggttCACTGGAGGCTCTGTTCAGCACTTTGAAatcataaagaaaagaaaaaaactctga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22828 lncRNA downstream 9187 6356620 ~ 6358931 (-) True LOC111191940
TU22761 lncRNA downstream 43772 6323480 ~ 6324346 (-) True G16855
TU22802 lncRNA downstream 176419 6191112 ~ 6191699 (-) True G16886
TU22774 lncRNA downstream 333215 6033217 ~ 6034903 (-) True G16865
TU22756 lncRNA downstream 515384 5852194 ~ 5852734 (-) True G16851
TU22841 lncRNA upstream 40041 6451424 ~ 6452260 (-) True G16914
TU22842 lncRNA upstream 40041 6451424 ~ 6452260 (-) False G16914
TU22848 lncRNA upstream 133960 6545343 ~ 6548426 (-) True G16919
TU22851 lncRNA upstream 134321 6545704 ~ 6548426 (-) False G16919
TU22857 lncRNA upstream 163461 6574844 ~ 6575316 (-) True G16925
XM_022668159.1 mRNA downstream 5113 6354945 ~ 6363005 (-) False LOC111191940
XM_007229452.3 mRNA downstream 16021 6333311 ~ 6352097 (-) True stx17
XM_007229451.3 mRNA downstream 76590 6235809 ~ 6291528 (-) False invs
XM_007229449.3 mRNA downstream 76590 6235809 ~ 6291528 (-) True invs
XM_022679531.1 mRNA downstream 183805 6172797 ~ 6184313 (-) False LOC103026216
XM_015604595.2 mRNA upstream 123476 6534859 ~ 6544275 (-) True sec61b
XM_022679618.1 mRNA upstream 263693 6675076 ~ 6896820 (-) True galnt1
XM_022679620.1 mRNA upstream 268416 6679799 ~ 6896820 (-) False galnt1
XM_022679643.1 mRNA upstream 606574 7017957 ~ 7046918 (-) True cdh17
XM_007236504.2 mRNA upstream 646049 7057432 ~ 7065913 (-) True LOC103045397
TU22791 other downstream 257918 6106906 ~ 6110200 (-) False LOC103024654
TU22788 other downstream 267803 6083120 ~ 6100315 (-) True glipr2
TU22789 other downstream 267803 6083120 ~ 6100315 (-) False glipr2
TU22790 other downstream 267803 6083120 ~ 6100315 (-) False glipr2
TU22583 other downstream 667631 5697045 ~ 5700487 (-) False G16709
TU22846 other upstream 123578 6534961 ~ 6543315 (-) False sec61b
trnat-ugu_7 other upstream 511684 6923067 ~ 6923139 (-) True trnat-ugu_7
trnat-ugu_8 other upstream 511860 6923243 ~ 6923315 (-) True trnat-ugu_8
trnat-ugu_9 other upstream 512038 6923421 ~ 6923493 (-) True trnat-ugu_9
trnat-ugu_10 other upstream 512216 6923599 ~ 6923671 (-) True trnat-ugu_10

Expression Profile