RNA id: XM_007229461.3


Basic Information

Item Value
RNA id XM_007229461.3
length 1123
RNA type mRNA
GC content 0.55
exon number 5
gene id frrs1l
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6593467 ~ 6603875 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCCCTCCCTCTATTCGGcctcaacccccccccccctcggtGGCGCAGTTTATCGTCGGTGCTACAGCTCTACAAATCTACTATCCTCTTTATTAATCCATCTGCTTCTAATAAACACGGTTTAATCAGATTAGGATGAGCTAAGAGATGTAATGTGAGACCAGAGGACCAAATGCGACCCCAGACGTGAGCCCCCCTGCTAACCCTGACTAGAAGAAGCCAGAAAAAGCCTGTGGTGATGTTTCTCCTGCAGCTTGCTCTGCTGCTGGAGCCCAGCCTGTGGCGGGCGAGCCTGGCCAGCCCTACCGACGACAACGCACTCCGGGCCGGCCACGGAGAGCACGGAGAGCCGGGGCACAAAGACCACCACCACAAGGACTCCTACAGTACCTTCGCCTCAGAGTTCCTCGAGTCCAGGTACCTCTCGGATGAAGGTTATCCCTTTCCAACGGCACCTCCTGTTGACCCATTCGCCCGCATCAAAGTCAGCGACTGTGGAATAACAAAAGGCTGTATCAGgtacGGAAAGCCAGGCTGTGATGCAGAAACGTGTGATTACTTCTTGAGCTTCAGGCGCATCGGCACAGATGTGGAGTTTGAGATGAGTGCAGACACAGATGGCTGGGTTGCTGTGGGCTTTTCTTCAGACAAGAAAATGGGAGGAGATGATGTCATGGGCTGTGTTCATGATGATAACGGGCGAGTGAGGATCCATCACTTCTATAACGTGGGTCAGTGGGCTAAAGAGATAAAGCGGAATCCAGCACGAGACGAGGAGGGAATCTTTGAGAACAACAGGGTCACCTGCCGCTTCAAGCGCCCACTGCACGTCCCGCGAGAGGAGACGCTGGTGGACCTGCATCTCAGCTGGTACTACCTGTTCGCCTGGGGACCTGCTATACAGGgtTCCATTACGAGGCATGACATCGACAATCCGCCAGTATCTGATCGCATGATCAGCATTTACAAATATGAGGACATTTTCATGCCCGCTGCCGCCTACCAGACTTTCTCCTCCCCTTTCTGCCTCCTTCTTATCGTGGCCCTCACCTTCTACCTGCTCATGGGAACCCCGTAACACCCAGGGACCCCAGTGGGCCGCCACAGGCACCGGGGCGAGGGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22733 lncRNA upstream 16162 6576991 ~ 6577305 (+) True G16831
TU22731 lncRNA upstream 18242 6574946 ~ 6575225 (+) True G16829
TU22730 lncRNA upstream 18691 6574537 ~ 6574776 (+) True G16828
TU22726 lncRNA upstream 54487 6536879 ~ 6538980 (+) True G16824
XR_002651238.1 lncRNA upstream 154585 6415862 ~ 6438882 (+) True LOC111194764
TU22716 lncRNA downstream 1392 6605267 ~ 6643077 (+) True G16815
TU22712 lncRNA downstream 39309 6643184 ~ 6645997 (+) True G16811
TU22740 lncRNA downstream 70840 6674715 ~ 6684107 (+) True G16838
TU22742 lncRNA downstream 85845 6689720 ~ 6800136 (+) True G16839
TU22749 lncRNA downstream 297347 6901222 ~ 6901911 (+) True G16845
XM_007229458.3 mRNA upstream 41466 6544275 ~ 6552001 (+) True alg2
XM_022679550.1 mRNA upstream 269572 6293072 ~ 6323895 (+) True erp44
XM_022679541.1 mRNA upstream 364008 6185481 ~ 6229459 (+) False tex10
XM_022679537.1 mRNA upstream 364008 6185482 ~ 6229459 (+) True tex10
XM_007229447.3 mRNA upstream 420568 6168760 ~ 6172899 (+) True LOC103025913
XM_007229460.3 mRNA downstream 3110 6606985 ~ 6641935 (+) True tmem245
XM_015604598.2 mRNA downstream 3111 6606986 ~ 6641935 (+) False tmem245
XM_007229462.3 mRNA downstream 314183 6918058 ~ 6922362 (+) False ino80c
XM_022679630.1 mRNA downstream 314183 6918058 ~ 6921842 (+) True ino80c
XM_007236503.3 mRNA downstream 388028 6991903 ~ 7001192 (+) False pdp1
TU22722 other upstream 60599 6532396 ~ 6532868 (+) True G16820
TU22663 other upstream 415583 6172756 ~ 6177884 (+) False LOC103025913
TU21431 other upstream 4911445 1681159 ~ 1682022 (+) True G15839
XR_002651100.1 other upstream 5260676 1322516 ~ 1332791 (+) False LOC103025578
trnat-ugu other downstream 46830 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 48105 6651980 ~ 6652052 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 49709 6653584 ~ 6653656 (+) True trnat-ugu_2
trnat-ugu_3 other downstream 50998 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_4 other downstream 52681 6656556 ~ 6656628 (+) True trnat-ugu_4

Expression Profile