RNA id: XM_007229697.2


Basic Information

Item Value
RNA id XM_007229697.2
length 2985
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC103022161
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45495681 ~ 45501646 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACGGGCTCTGTCCGGAGCTGGAGTTGGGACATGACGCAGGTCTGGGGGGTGCAGCAGCCCACGACCACTCCAGTCCTCCTCTGCGCTCCGAGCAGACGCATCGTGCGCTCAGAGGTGGAGGAACGAGGCGCTCGCTCCGCGGAGGGAGCAGCAGCTTTCTGAGAGAACagcctctctcttttccccGCAGCGCTGAGAGATCTGTGGAGATGGTCGTGATGAAGTTGCTGTGTGTGCTGGCTGTgactctgtctctgtgtgcagatgcCAAGTCTTTACCGATCGAACAAGACGGCACACGGGATAACCTGCTCACCCACTGTTTGGTTCAGATCCTTTCTAAGGCACTGTCCAAACCAGATGGAACGCCCCTGCAGCCCGAATGTAAAGAAATTCTCAAGGCAGGTTCCACTCACTCTTCTCCTGTGAACAAGAACCAGGAAGATGTTCTTCCCCCAAAGCAAGAGGAGGTGAGGCATGAAGGGGGATCCATAGAAAAAGCACAGGAGGCCATTGCTAAACTTCTCaaagcagaagaggaaaaacaTGAGGATGAGTATGAAGAACGCAGCCAGGAGGAATTTCCAAATTACTACAAGAGACACCACCTTTTAACAAGCAAGGAAAAGCGCGAAGACACAGAAGACGAAAGGAGCCAAGAAGAATTCCCTCAAAAAAGGCATCATTTGTTCTCCACTAAAGAGAAGCGCGAGGATCCAGATGAGGAGCGAAGCCAAGAAGAATTTCCAACCTACGAGCAGAAAAGGCACCACCTCCAAACAAGCAGGGAAAAGCGTGATGAACCCGACGACTATGACCGTAGCCAAGAAGAGTTCCCAAGTTATGTTCACAAGTACCACAAGAGAGATGGAGATTCACCCGATGAAGAGTTTGCTGAATCAGCAGAGGAAGAGGATAGAGATAAACGACACTGGAGACCAGGCCATAAACATCAAAGGAAATATCACAAACGGGATGATGAAGATTTTGCTGAACTGAGCTCTCAAGAGAAGAGGCCTGAAGAATCAGCTGAGGAAGACGAAGAAGAGGAGGATAGAGCTAAAAGACATTGGAGACCAGGTCATAAACATCAGAGGAAATATCACAAACGAGATGTAGATTCAGGTGAAGAACTTGGCTCTCAAGAGAAAGGACCTGAAGAGTATgtagaagaagaggaagaggacagAGACAAACGACATTGGAGACCAGGTCATAAACATCAGAGGAAATATCATAAACGGGATGGGGACTCATCTGATGAAGATCTTGGTGAATCattggaggaagaggaagaggacagGGACAAACGACACTGGAGACCAGGACATAAACATCAGAGGAAATATCATAAACGAGATGTGGAGTCAGATAAAGAACTTGGCTCTCAAGAGAAAGGCCCTGAAGAATATgtagaagaagaggaagaagacaGAGACAAACGACATTGGAGGCCAGGTCATAAACATCAAAGGAAATATCATAAACGGGATGAGGACTCAACTGAAGAAGATCTTGGTGAATCagtggaggaagaggaagaggatagGGAAAAACGACACTGGAGACCAGGACACAAACATCAAAGAAAATATCACAAACGAGATGTGGAGTCAGATGAAGAACCTAGCTCTCAAGAGAAGGGACCTGAAGAATATgtagaagaagaggaagaggacagAGACAAACGACGCTGGAGACCAGGTCATAAACATCAGAGGAAATATCACAAACGGGATGGGGACTCATCGGATGAAGATCTTGCTGAATCagtggaggaagaggaagaggatagGGACAAACGACACTGGAGACCAGGCAACAAACATCAGAGGAGGCACAAGCgaggtgaagaagaagaatcagAAGATATGGAAAGTGAGGAGAGAGATAAGAAGGCTTGGTGGCCCAGCCAATGGTTCCAACATCAGAGATACCGCAAACATGCTGGAGAATCATCTGAAGATGACTCTGAAGATCAGCCACCTGAGAAAACATATGAAGAGCACAAGAAGCCCCATTCAcctgaggaagaagaggaggagctaATTGCCAGAGAGATTAAGGAGAACGGGCACCACAGCCCTTCAGAAGAAGAGAAGCAAGAGAAGGAGGCAGCACTGAGATACCTGACTAAGAAAAAGAACGAGTTGGAGGAGCGTCTGCTGAAGGAGGGCGAGGTTTACGAGAAGCGCAATCCCTGGATTTATCGAGGATACTACCATCCAGCCTGGTATAAGAGGAATTCTGAGCTTGCCAACACCATTCGCTACAAGCGAGGTTTACTGCCCCAAAACGATTCATCTGAGGGGGAACTGCACGAGAGGGCTCTTAATGCAGATGAGTTAAAAGAACTGGAGAAACTGGCCTCAATGGaccaacaaataaaacatacagattAGCAAACTTCGGAAGCAGAAAGGAAACAGCCACCCAGACGAGACGAAACGGCTAACATTCCCCCGTTATGATCGTCCAGAGGCTTTGTGCGTTGCTGCTTTGGGATGCTTTTTGGATTATTTCCTATATTTGAACTTGATgttaaaaatgccaaaaaaaaagaatgctcTGCTTATAGCATTGGTCCACAGTAATGTTTTATCTTATGTGAGATATTATAGACAGTGAAAGCCTTATATTACCTAACTGCAATgttgaatttaaaataaattagttcAAACTGCCTGAAATGGGGaacaaaataggaaaaaaaaactacaaaagcacaaaactatGCCTGTTTACTATTCTGCATCTAATATTATAATTGTGAAATTTGATGTTAAACCTAATGCATGAAATCTACTGATTAAAGACATTTGGTGTTGTTTTCCATTCTGTATAACTTAttattctaaatatatttatagagcCTGCTTTTGTTGTGTGCATCTAATAAAACGTGCTACAATGGGACCAAAGCACTAATAGTCATGTCTCTTAATTTTATGCTCCTTGCttaacaataaagaaaacaaacaaaa

Function

GO:

id name namespace
GO:0000281 mitotic cytokinesis biological_process
GO:0061640 cytoskeleton-dependent cytokinesis biological_process

KEGG:

id description
ko04911 Insulin secretion
ko04723 Retrograde endocannabinoid signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35391 lncRNA upstream 382713 45111185 ~ 45112968 (+) True G26322
TU35350 lncRNA upstream 629997 44865143 ~ 44865684 (+) True G26286
TU35342 lncRNA upstream 641171 44853881 ~ 44854510 (+) True G26280
TU35289 lncRNA upstream 695035 44799984 ~ 44800646 (+) True G26235
TU35279 lncRNA upstream 725679 44769262 ~ 44770002 (+) True G26226
TU35490 lncRNA downstream 22842 45524488 ~ 45528585 (+) True G26402
TU35583 lncRNA downstream 565242 46066888 ~ 46067187 (+) True G26476
TU35587 lncRNA downstream 578659 46080305 ~ 46083403 (+) True G26477
TU35643 lncRNA downstream 854239 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 862238 46363884 ~ 46409990 (+) False G26529
XM_015605208.2 mRNA upstream 54425 45433919 ~ 45441256 (+) True LOC103023922
XM_007229703.3 mRNA upstream 54425 45433922 ~ 45441256 (+) False LOC103023922
XM_022686646.1 mRNA upstream 535445 44872464 ~ 44960236 (+) False atad2b
XM_022686643.1 mRNA upstream 535445 44872465 ~ 44960236 (+) True atad2b
XM_007229711.3 mRNA upstream 686832 44803559 ~ 44808849 (+) True wdcp
NM_001320207.1 mRNA downstream 58900 45560546 ~ 45570484 (+) True LOC103028976
XM_022686778.1 mRNA downstream 113916 45615562 ~ 45755435 (+) False LOC103021983
XM_022686776.1 mRNA downstream 113917 45615563 ~ 45765954 (+) False LOC103021983
XM_022686757.1 mRNA downstream 113918 45615564 ~ 45785454 (+) True LOC103021983
XM_022686761.1 mRNA downstream 113918 45615564 ~ 45785454 (+) False LOC103021983
TU34777 other upstream 2001366 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2070775 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2073635 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2132237 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 2979124 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 1026749 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 2776621 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 2779119 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 3054151 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 3054151 48555797 ~ 48641905 (+) False G26995

Expression Profile