RNA id: XM_007229702.2


Basic Information

Item Value
RNA id XM_007229702.2
length 2108
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC103023605
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45441438 ~ 45448166 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAGTAAACCCGTCGGCAGTAATCCCCAGCTACAGTAGCGACACAGAGCGGGTTATACGGAGCGCTGCGGAACATTAAGTTTATACGCCTGTTCTTCTGATCGCTTACTGAAACAGAATGGACAATTCGGGCAAGGAGAAAGAGGCCATTCAGCTGATGGCTGATGCGGATAAGAAAGTGAAGTCGTCCGGCTCTTTCCTAGGAGGGATGTTTGGTGGGAATCACAAAGTTGAGGAGGCCTGTGAAATGTATGCCAGAGCAGCCAACATGTTCAAGATGGCCAAGAACTGGAGTGCTGCAGGAAATGCTTTCTGCCAGGCAGCCAGACTTCACATGCAGCTTCAGAACAAACATGATGCAGCCACCAGTTTTGTTGACGCTGGAAATGCCTTCAAGAAGGCTGATCCACAGGAGGCCATCAACTGCTTAAATGCAGCCATCGATATTTATACAGACATGGGACGATTTACCATTGCAGCCAAACACCATATCACAATTTCAGAGGTGTACGAGTCAGAACTGGTTGATATCGAGAAGgCAATTGCACATTATGAACAGGCTGCAGACTATTACAAAGGGGAGGAGTCAAATAGCTCTGCAAACAAGTGTCTCCTGAAGGTTGCTTCATACAGTGCCCAGCTGGAACAGTATCCAAAGGCCATTGAAATCTACGAACAGgtTGGAACAAACACTATGGACAACCCTCTGCTGAAATACAGTGCCAAAGAATACTTCTTCAAAGCCTCCTTATGTCACTTCATTGTGGATGAGCTCAATGCAAAGCTCGCTGTTGAGAAGTATGAGGAAATGTTCCCAGCATTTTCTGATTCAAGAGAGTGCAAACTTTTAAAGAAACTTCTGGAGGCCCACGAGGAACAGAATGCAGAGGCTTTCACAGAAGCAGTGAAGGAGTTTGATTCTATTTCACGTCTGGACCAGTGGCTAACCACCATGCTCCTGCGCATTAAGAAAACCATCCAGGGTGATGAGGGGGACTTGAAGTGAAATGTAGAGCTGGGGGAAACCATCCAAGGCATGACACCCCCTCCCcgaaacatttcatatcattttTGTGCAATGGCCAAGTCCAGGTTTCCCAGTACGATATGTTAAGATTTATTGCTGCAGCGTTTATAGcgcacatataaacatattacaTTGATTTCGtacattatttttaacattaatattaggCTTTCCAACATTAGACCTGGTTTGGGCTGCTAAATCTCAGGCTCCCTGTTTTTATAATGAATGTTTTTTCTGAATACACAAAGTGGTGTAGTTCAGTGTCGGGATCAGCCAAGGATAAACTAGGGACCTGAGAAGTTGGCTGGTTAAGTAATCACTGGATTGTGGATTGCTAGTGCTGCATGACATGTACAAATGTAATTATGGTGTCAGAAGAccagaaatattttaaagtagattgaaatttgtttgattatttatttattttatttgtgcaaTCTGTACTCATCCTATTTCTGTCAGTACCTCTACAGCTGTGTAGGCCTCATGTCTCCTACGGAAATCTATGGGTTTGTCAGTCTTAATTTAATACTCAGTTATGTTAATGTTCTACAAAAGTGTAACACATGTCAGAGTAATGAAGTATAAACAACGTTTATTTCTTAATCCTGTCACGATGTTCAAATTAGTAAtgtttctttatgttttatttatgtttctactttctctcatttatATTTGACCTCACTCATTGGTTTGCAGGTTGCACACCACTTACATATACAACTGAAGGCAAACACTTGTTGCTCCATGTTTGTTAGCATATTCAAACTATGAACGATTTGTGAAATCCCTGTATAACCTGTGTCGATGTGCTATGTGTTGTGTTGTGAATTCATCTGTCATGCAGCACTTATGCTAGTGCACTCTCCATTTTGGTGGTCCTTAGCAGCGCATGTcacagtgtgtctgtgtattaGTGATGATATTTAGTATCTCACTGTATCTatagtttttaaaaagccatcACTAGAGGCAACCTACTTATTTATCTAGGTTCTTTCTGACTGAGTAATTGATCTACTGCTGAATGTCTGTATGAAAGCACAGAAATAAAGGTCTGAtattaaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35468 lncRNA downstream 31402 45408433 ~ 45410036 (-) True G26386
TU35418 lncRNA downstream 201220 45239901 ~ 45240218 (-) True G26347
TU35416 lncRNA downstream 280508 45142890 ~ 45160930 (-) True G26345
TU35412 lncRNA downstream 327477 45112538 ~ 45113961 (-) True LOC111197337
XR_002652400.1 lncRNA downstream 327669 45112711 ~ 45113769 (-) False LOC111197337
XR_002649723.1 lncRNA upstream 149421 45597587 ~ 45604161 (-) True LOC111191909
XR_002652433.1 lncRNA upstream 285150 45733316 ~ 45742850 (-) True LOC111197418
TU35704 lncRNA upstream 395008 45843174 ~ 45844931 (-) True G26563
TU35706 lncRNA upstream 399451 45847617 ~ 45849592 (-) True G26564
TU35764 lncRNA upstream 618482 46066648 ~ 46067188 (-) True G26612
XM_007229705.3 mRNA downstream 75592 45358910 ~ 45365846 (-) True trib2
XM_007229706.2 mRNA downstream 126183 44983244 ~ 45315255 (-) True klhl29
XM_022686658.1 mRNA downstream 570748 44856099 ~ 44870690 (-) False ubxn2a
XM_022686654.1 mRNA downstream 570748 44856099 ~ 44870690 (-) False ubxn2a
XM_022686664.1 mRNA downstream 570748 44856099 ~ 44870690 (-) True ubxn2a
XM_022686715.1 mRNA upstream 3120 45451286 ~ 45465612 (-) False gpcpd1
XM_022686726.1 mRNA upstream 3120 45451286 ~ 45465612 (-) True gpcpd1
XM_022686721.1 mRNA upstream 3120 45451286 ~ 45465611 (-) False gpcpd1
XM_007229699.3 mRNA upstream 53485 45501651 ~ 45512516 (-) True trmt6
XM_007229700.3 mRNA upstream 67029 45515195 ~ 45531393 (-) True fermt1
TU35470 other downstream 3853 45436109 ~ 45437585 (-) True G26388
TU35363 other downstream 555637 44882778 ~ 44885801 (-) True G26295
TU35356 other downstream 570759 44867094 ~ 44870679 (-) False ubxn2a
TU35290 other downstream 641963 44769292 ~ 44799475 (-) False fkbp1b
TU35291 other downstream 641963 44769292 ~ 44799475 (-) False fkbp1b
TU35737 other upstream 486987 45935153 ~ 45935622 (-) True G26588
TU35796 other upstream 843921 46292087 ~ 46292806 (-) True G26636
XR_001518806.2 other upstream 979251 46427417 ~ 46435925 (-) False naa30
TU35879 other upstream 1070705 46518871 ~ 46521243 (-) False G26695
TU35877 other upstream 1075482 46523648 ~ 46525996 (-) True G26695

Expression Profile