RNA id: XM_007229703.3


Basic Information

Item Value
RNA id XM_007229703.3
length 3888
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC103023922
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45433919 ~ 45441256 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAcactgtgttttaactaaatgtgagcagtgtctgtgtgtgttatgcTTCAGGCAGCTAAACGCTGTTTAGTGCCGTGTTTTCCTGGGGGATGAGTCCTGTGGGCTGCCGGGATTTTGGTCTCCAACATGGCTGTTTGGTAGCTGGGTGCGATTTCTACAGGAAATACTTTCTGCTGGGCTGTGGATTTGTGCAGGGCTGCCATTCTACCGAGCTTACGTTTCACAAAGGGAATAACGATGAGTGATCCAGTGGTTCAGCTGGTATCCAGCTGTTATCAGGAAAATTTGCTTGAGGCAATGTGGAACCTAAGGGCCAATGGTGATCTGTGTGATATCACAGTGCAGGTTGATTTCCAAGGTCAGCTGGAAGAATTTGAGGCCCACCAGATAATACTTGCCGCATCCAGTGGCTATTTCAAGACCTGCATCTTGGCGAATGAACAAGTgaataaaatattcttaaatgATTTTGCACCCAAAGCCTTTGCCAAATTTCTAGAATACGCATATTCGGGGAAAATGGAAGTGGAAAAGAGCTACCTTAGCCACATATTGCTGATGGCGAAGCAGCTGGACTGCCAAAACTTAGTGGAGGCTTGTGATTCAATGCTTCTGAATTATATTttggaaaacacacagaaagggaaagaaaaagcaaaaagaggGAGGCCAGAAAAGCAAACAACTGAATCATTAGGTATGAGAAAAAAGATGAAAGTCATCCACACTAAAGAGGCGGAAAATGAAAGGGCACAGGGTAGGAGGAGTAGCAGCAGGTTAGCAGGCAGCAAAGTCTTTGTCAGTATCGACAAAAAAAAGACTGGCCGCAGGTCACAAGCCCAGTCTGAGGCATTGGACATCACAGAAAGTCCCAATGAATCAGAGACAAGAACAACACAAGAAGAGCCATTAAACATTTGTGAGTCCAAAGAAGCTAGTGATAAGGTTTTTCCTGAGAATGAGGCCCTTATGGACAGTGGGTCTGAGGCTGGTAGTTTCAACATTGATTTAGCAGATGAAGAATTTCATGACCCTGAGTTCCTGCCAGCTGAAGCCAAAGAAGAAACAGATGAGGCTGAAAAGGAACAAAAGTCGGGTAGTTCCAAATATGACTGTCAAAAGTGCTGTCGTTCATTTCGCTATGAGAAGAGCTACCTGAAGCATGTCAAAGTTAGTCATGGCATTGAGACTGACACTACCTACCGCTGTGATATCTGCCAGCAGACTTTTGCCAACCGCTGCAACCTTAAAATCCATAAACGGCATGTGCACAATGACGACAGGCTCTTTCCATGTGACGTCTGTAAGAAGGCCTTTAAACGCAAGAAGGATGTGACGAGACACAGGCGGCAGGTCCATGAGGGTGGAACTGAGCGCTACTACTGTACAATTTGTGGTAAATCATTAAGCTCCAGAACAGCCCTCACTCTGCATGAGAGAACACACACCGGTGACAAGCCCTACAGCTGCAACGAGTGTGAAGCCAGGTTCTCCCAAAGCTCTGCACTAAGAACACATCAGAGGAtccacaccggtgagaagcctTTTGCTTGTGATATGTGTGATGCCAAGTTCACCCAGAACCACATGTTGGCCTACCATAAGAGATGCCACACAGGAGAAAAGCCCTTCATGTGTGAAaactgtgggaaaagttttgCATCTAAAGAATACCTGAAACACCATGCCAGAATCCACTCTGGCTTCAAGCCTTACAAGTGTGACAACTGTGGAAGAGCATTTGCTCAACGAAACTCCCTTCATCAGCATATGAAAATACATACAGgTGAAAGGCCTTACCATTGTAAGGAGTGTGACAAGCAGTTCACCCAGCTGAACGCTCTTCAGAGACACCAAAGAATACACACAGGAGAAAAGCCATACATGTGCAGCGTGTGTGGCCGGACCTTTACAGACAAGTCTACTGTCCGCAGGCATGCCATGACTCACGACAAGGACACTCCTTGGAAGAATTATCTGGTTGTGCTGGAGGGTAATGTAGAAGATCGCATCAAGACACAAAAAGGTTCCTCTGACAAGAACAAGGCAGAAGAAATTAATGAAGAAGAACACAATCAAGAGGAGAAACAGAGTGAAGATCAGACCCAGGAGATAGTGACAGTGTCTGAAGAGCCAGTGACCATCTCTGGGGACTGGGCTGGCCCAGGCACCATTGCGCTGGTCAGCCATGGAGCACTGGGAAGCCTCGCAGTGATCCAAACTGAGGTGCCTGCTGGTACACAGCTGCAGCCCATTGTCGCCGCTGATGGAGCCAGTGTAATTTCTCTGGATAGTTCTACTGTTGGAATTCCTGTTACCGTTCCTTTTTCCATTCCCATCTCTGTTGCACATTCCATCTCCGAGTCAACAGCACTTACTGTCGCAGTCCCCCAGTCTGACCAAGCCACGGTTTCAGAGGCTGTGTTGGTGTCaggagacacagacacagaagcCCTTCTGGTACCAACTGAAGTCAGTTTGCCTACTGAATGCACAAAGCCACAGTCAGTGGTGGAGGAAGCTAAACAGGGACAAAACTTAGACACCCAAGAGGAAATGTCTGATAATGTGCAGCCTACAGCAAAAGCAGAAGCCATAGAGGCCTCTACAGAAGATTAAATTTAAACCTACATCATTGGCTTTTTCCCTACACTGTGTAATACAATCATATCATTGCTTTTCTAAGAAAATATATTACGTACAAACCTCATCTGAAATAGTAATTTTAGactatttctatttctgttaTTCGTTTTTCACAGTGTAGAAGGTAGATGTTGTACTGAAATGATGTAGAtggaatgtaaatgtaatacatGTAGAAATATAGATCATTGAGTTCATAGGAAAGTAACAGTATTTTTACTATCAttcctctctgctgtaaagagtgtgtgtataatatgtgtgCGTGTATACACTCATTTAatactttattaggaacactatACTAATACTGAAAGGGGCCTCTAAAAACAGCCCTAAATTAATTGTAGCATTTATTCcacaattttgttttatattttccaaAGAGATTCTAGTGCTTGTTCATAATCACATTTCAATCCTGCATCCAGGTTTTTCGTGACCTCTAAATCATTTATTCTATCATGTcccaaatgtgttttattgaattCAGAGCTGTTACTGGGACAATTATTAAACAGTTGTCTTGTTTGTAATTTTTCTAgcagaaatatgtttttaagaAGTAAAATGTGGTCAGAAAGGAATGTGCATGGTCAGCAACACTACTGTAGCAATTTAAGTGTCTTAATTGATATTAAGAAGCCCAAAGTGGGCAGTTTACACCATTAGACCACCTCCAATATCATGGGACCTTTTTTGTGGAATTccttcttttaaaaatgttatgtacTCTCAGAGCTGAAAGCTTCTGGATGCAGAAAAAAGCCATTCTCATTTGCAAATTAAAAGCTTTGCCTTTAAGTGACACTAAAacacattagaaacgaacataCAAAATGAAACTGGCATGGGGAAACAGACATTCTCCCATTCAAGTTGTATTTAGTACTGACAGTGAACATAAAAAACATGGCCTATGCAATGTTTTTTGTTCATACACTGTAGTACATGAGGTCCCTGGACTGTTAAGACAAGACAGTTTGGATCCATGTTTTCATGCTGTTGTGTTCATCAATAGAAAATGAGTTTCATCAGAAAAGgctgttttttcattttattgtataGTATTGGTAAGTGTGCATAAACTGCTGCCttagctttctgttcttgttcTATTATAGTCCATGAGGCATAAGTATTGACTCATTATGCATGCTTTTCTGCTCACCACAGTTGTACAAAGTGGTCGTCAAAGTTTCATTACTACACCATTATGATTAAACCCTGTTGTGCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35391 lncRNA upstream 320954 45111185 ~ 45112968 (+) True G26322
TU35350 lncRNA upstream 568238 44865143 ~ 44865684 (+) True G26286
TU35342 lncRNA upstream 579412 44853881 ~ 44854510 (+) True G26280
TU35289 lncRNA upstream 633276 44799984 ~ 44800646 (+) True G26235
TU35279 lncRNA upstream 663920 44769262 ~ 44770002 (+) True G26226
TU35473 lncRNA downstream 8753 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA downstream 83232 45524488 ~ 45528585 (+) True G26402
TU35583 lncRNA downstream 625632 46066888 ~ 46067187 (+) True G26476
TU35587 lncRNA downstream 639049 46080305 ~ 46083403 (+) True G26477
TU35643 lncRNA downstream 914629 46355885 ~ 46357866 (+) True G26522
XM_022686646.1 mRNA upstream 473686 44872464 ~ 44960236 (+) False atad2b
XM_022686643.1 mRNA upstream 473686 44872465 ~ 44960236 (+) True atad2b
XM_007229711.3 mRNA upstream 625073 44803559 ~ 44808849 (+) True wdcp
XM_022686640.1 mRNA upstream 625073 44803577 ~ 44808849 (+) False wdcp
XM_022686638.1 mRNA upstream 706717 44710373 ~ 44727205 (+) True LOC111197225
XM_007229697.2 mRNA downstream 54425 45495681 ~ 45501646 (+) True LOC103022161
NM_001320207.1 mRNA downstream 119290 45560546 ~ 45570484 (+) True LOC103028976
XM_022686778.1 mRNA downstream 174306 45615562 ~ 45755435 (+) False LOC103021983
XM_022686776.1 mRNA downstream 174307 45615563 ~ 45765954 (+) False LOC103021983
XM_022686757.1 mRNA downstream 174308 45615564 ~ 45785454 (+) True LOC103021983
TU34777 other upstream 1939607 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2009016 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2011876 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2070478 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 2917365 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 1087139 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 2837011 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 2839509 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 3114541 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 3114541 48555797 ~ 48641905 (+) False G26995

Expression Profile