RNA id: XM_022687038.1


Basic Information

Item Value
RNA id XM_022687038.1
length 1546
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC103043020
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46352209 ~ 46360826 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCGAACAGCTCTAGTTCTCACTACAACCCGGAAGGAGACGGAGCCGAGctttgtgtttgtggtgtgcgGTGTTGTGTCCGGGCGGACTGTGAGCGCGGTGATGATGGCATTTGGACGGCCAGGATAAAAAAGTTTCAACAGTTGTAATGTGAAGGCTGTTTTAGACCCAGTCTTCCTATGTATCCACATCAGCAGGATCATATAAGACTGAATCCATGCTTTCTGATGAGCTTGACTCCAAACCTGAGCTGCTGGTTGAGTTTGTGCAGAACGCCTCCATACCGTTGGGCCAGGGCCTGGAGGAATCAGACCCTAAGACACCGTGTCTACCTCTCCTTGCCTCTTCTGAAAACTCCATATGCAGCCAGCTAGACCTTCAAGAGAGTACTCTTAGCCATGCGGCTTCTCCATCACTGTCAGAGTTTGGGCCAGAGCGAAGCCCCCTGGTTGTGCAGCTTCAGTCTCACTCCCCAACGACAAGCCCACCGGCACTACTTCAGGAACTTCAGCAACCAGACAGCACCTCTTATGTCCTGCTCAACCTTGCTAAAGGGTTGGCAGCATCCGCGGAGCCGCTGGTGTTTGTGCAGGATGACGTGGATGAGGCAGAGGAGGAGATTTCTGCAGGAGAGTGTGGAGATGGGAGCGCCCCGTGGTACCTGCGGGTGCAGGAGTTGGCCCACGACAGCCTGATCGCTGCCACCCGAGCCCAGCTGGCAAAGGAAGCCAGGGCTAGTAGCAACAGTGACCATATTCACAGCTACCAGACAGAGGCACCAAAAAAGGAGCAACCACCACGGAACAGTCGTACATCTGCAGAGAAGATTCTTAGGTGTCCTTATGAGAACTGCCACAGGACATTTACCTGGCCTGCACATCTGAAGTATCACCTTAAAACACACAGGAATGACCGCACATTCCGCTGCGGAGCTGAGGGCTGTGGAAAGAGCTTTTACGTGCTGCAGAGACTGCAGGTGCACATGAGGACGCACAATGGCGAGAAACCCTTCATTTGTAATGAGAAGAACTGTGGCAAAAAGTTTACCACAGCCGGTAACCTGAAGAACCACAAACGTACACATACTGGTGAGAAGCCCTTCCTTTGTGAAGCAGACAATTGTGGACGTTCCTTTGCAGAATACTCCAGCCTACGCAAACACATGCTGGTGCATTCTGGAGAGAAGCCTCATCAGTGTTCCATATGCGGGAAGACGTTCTCTCAGAGTGGCAGCAGAAACGTCCACATGAGGAAGCGTCATGGAGAGGATGCTCTCAGTTCAGAAAGCAGAGAAACAGGAGAGGCTCTGACTCACAGCAGTTTGTTAGAGGCTGATGGTGCGGTTGGTGAGTCCATGGTAACCATGACAACAGTTGTGGAGCCAGTTAATCTACACCATGCAATGCTGAGGGCACAAGGCCCTGCAGACCCAGTCGTGGTACTCTCTCCACCTCATGATCTGGTCTCTGGAGGTCATGGTTATGGGGAGGACGTTGTGGCATTGCTATAGTagtatttgtaaataaagtaattattgaGTTCATGta

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35757 lncRNA downstream 190110 46076136 ~ 46162099 (-) True G26605
TU35764 lncRNA downstream 285021 46066648 ~ 46067188 (-) True G26612
TU35706 lncRNA downstream 502617 45847617 ~ 45849592 (-) True G26564
TU35704 lncRNA downstream 507278 45843174 ~ 45844931 (-) True G26563
XR_002652433.1 lncRNA downstream 609359 45733316 ~ 45742850 (-) True LOC111197418
TU35832 lncRNA upstream 892 46361718 ~ 46361918 (-) True G26663
TU35837 lncRNA upstream 35135 46395961 ~ 46409064 (-) True G26666
TU35838 lncRNA upstream 35135 46395961 ~ 46409064 (-) False G26666
XR_002652516.1 lncRNA upstream 217461 46578287 ~ 46599431 (-) True LOC111197648
TU35951 lncRNA upstream 301293 46662119 ~ 46663963 (-) True G26751
XM_022687006.1 mRNA downstream 14668 46329406 ~ 46337541 (-) True LOC103042705
XM_015601184.2 mRNA downstream 23099 46317964 ~ 46329110 (-) True LOC103029737
XM_022686938.1 mRNA downstream 222967 46112627 ~ 46129242 (-) False LOC103025714
XM_022686929.1 mRNA downstream 222967 46112627 ~ 46129242 (-) False LOC103025714
XM_022686902.1 mRNA downstream 223093 46108572 ~ 46129116 (-) True LOC103025714
XM_022678311.1 mRNA upstream 3303 46364129 ~ 46374917 (-) True LOC111194350
XM_007230708.3 mRNA upstream 26833 46387659 ~ 46395067 (-) False LOC103044046
XM_007230709.3 mRNA upstream 26833 46387659 ~ 46395067 (-) True LOC103044046
XM_022687064.1 mRNA upstream 35673 46396499 ~ 46404613 (-) True LOC107197829
XM_022687087.1 mRNA upstream 49630 46410456 ~ 46416421 (-) True actr10
TU35796 other downstream 59403 46292087 ~ 46292806 (-) True G26636
TU35737 other downstream 416587 45935153 ~ 45935622 (-) True G26588
TU35470 other downstream 914624 45436109 ~ 45437585 (-) True G26388
TU35363 other downstream 1466408 44882778 ~ 44885801 (-) True G26295
TU35356 other downstream 1481530 44867094 ~ 44870679 (-) False ubxn2a
XR_001518806.2 other upstream 66591 46427417 ~ 46435925 (-) False naa30
TU35879 other upstream 158045 46518871 ~ 46521243 (-) False G26695
TU35877 other upstream 162822 46523648 ~ 46525996 (-) True G26695
TU35943 other upstream 172869 46533695 ~ 46535753 (-) True fkbp3
TU35957 other upstream 343521 46704347 ~ 46738736 (-) True G26754

Expression Profile