RNA id: XM_007230709.3


Basic Information

Item Value
RNA id XM_007230709.3
length 5088
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC103044046
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46387659 ~ 46395067 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGAGGGAGAAAAGATGAAAACTGCGCTAGAAATTACATGTGATAAATGTTATtatgagtgaatgtgtgtttctgCGGCGGTTCTAACGGCGTGGGTGTTGTGTGCGGGGGGTCTGCTGAAGGCGGGTGTCTCCCCTCGGCATGTGCGCAGCTGTGTGTGGGGGTGTCGCCGGACTACGGTACTCTCCGGTCTCGTGTACAGTATCGTGTACTCCTCACTGAGAGGTTTACGCTACGTGACCGACGAGAGAGAGACGGACAGGCGGGCGGGGAGACCGAGAGAAGCAGCCGAGAGAGCAGGTAGGGCTGCGGAGAAACCCATGTTCACCTGTTCAGAGCGCGGGTTTCAGAAAGCTACCTCTCATTGTGAGAGGTTAAGATTGGTGTGACGGACCCAACTGGTGGGACCAGGATGAGCAGAAAGATGAAGGAAGATGTTGTGAGGACTGTGTGCAAATCCAAAACCAAGAGACTGAACAAGAACGCAGATTCTGAAAGGGATTCAGGTTTCTCAGATGCTGGTTCTGAGCATCTGAGTACGCTTGATCGCACAGATGCAGAAAATGCAACTCGAACAGGGATTCCGGCAGCGGGGGGTTCACAGTCACAGCCTTCTCAACTGGCTGTCATGGGTGGATCTTTTCAGAGTTTGTCCCCTATGATCTTTATGAACAATGTTCTTCTCAAACAgCCTGGCGACAACCCTAACCCTATGAAGCCCTGGGGCTTCAGTCCAGCTGTTGAGGTTGTTCAGCAACCACAAGTAGTCTTCCTCCAACCAGTGGTCTCCCAGAGAGCTGGTACAGTGCCAAAAGGACCTGCCAGTAAGCGTCGAAGACACAAGAAGTACCTTCCTATTCTGAAATCCTATCCCAAAATTGCTCCTCATCCTGGAGACAGCCCACGAAGTAACTGCACTAGTAACAGCAGCAGTAGCTCCAGCACCACTGCTTCAGTGAAGAGTTCCAGTTCATCTTTCAGTTCCTGGGATCAGCCACAGGaagaaaaacagcaatgtttacgGAGTTGTGCCTCTTCTAGCTCCTCAACATCAAATCATCTTCCACCAACCAGGCATGTGCCAGCATCGCCTCAGCCACATCCCACACTCACAGATACCAACACTGGCAGTTGTCCTGGTGTTGAAAGGCCAGCTAATGGACGGCTGGAGCTCACTTCAGCATCCGCAGACTTGCATAGCAAGGCATTACAGCCTCGTCCACAAGCGGTCTCCAAGGATGGCATTAGTGAAAGCAGTGACTCTGACAACAGCAGCAACAAGCGGAAACGATTCTGCAACACCTACAACATTCTCAGTAAATCTGGCTTATTGGACATTACTCTCCGCACTAAAGAGTTGATTCGACAGAACCGGCGAACCCAGACTGAACTGGATCAACTTCGTGAGCACACAAACCTCTTCATGGAAGTCCTACAGACAGGAGACTTGCATGTCTTGAGCAAACTGCAGCTGAGCATGCAGCaggacacagagaaagagaagaccAATAACAATGACTCGGAGACACAGATTGATCAACTAGAGTAAGAACTCCTGAAACAGAGACTCAGAATTTTAAAGCAGATATTCATATTGTCTTTCTTACCatcttttgatcttttttttataactgtaaatttaatatattcATAAGACCTGCCAACACCTGCCATTCTGCAGAAACAGACAGTGTTTTAAGAAGATAGAAAAATGTGAGTAAGGGTGAGCAAAATAAAATTTGCTCTTGTTAGCATCACAATAAAATGAAGGAGAAAACAGCTTAAGTAAAGTCATAATCAAATACACACATTAATGACTACAACATTGCTGAATATTCATAGGCCTGGCAATATTAGCAATATCAGTATAATTTTCCAACTACAGTTAGTTTACTAAGAACTTATAagggctttttcttttttgcctcAGTAACATTGCTAGATTTATAGGCTTAACATGGTATGAATGTAGCACACTCACTGcagaaaaacaatttaaatatacagggataaacaagcaaaacagaTTCTCTATGGGGATGGAATAATCATACGTGTTTTCTTATTAGCACTATTCATCTAtacaaatggcaaaaataattattgtgcctatattacattaatctcatttaaaaatatataaaagtcatGAAGTACACTACTGAAAATTGAACCTACATAACTCACCCCTATCTCTTTGTCCGCTctcaatataaacacaatttatacatttaaaagaaaatgtccaAATTATGTGTTGGAGTGGTGTGATAATATGGATCAACATATTATGATTTTTATATCAAGTCAAAGAGATCAGGCATTTCAGTTGTATTTGAAGGGTTTATTGCAAAAACAGGTATCTTTTAAACATACCTTtaactctttatttctttttaaagaaacagtCTGGTCACTTTATAGGTATCTTATAAAGATCTAAGGCAGGTTGTGATCTATGGACCTTTCTACATGAGTAATGTCTTGTAGCAGCACTTGGCTGAACTCATTTTGTATTCTCTGCTCTTTAAGTATTCAGCATGTCAGTGGCctgtattttgatattttagttTTCATTGATTAccaatgtaaattatttaacaTGATCTGAcgatacaaataaaatgtataaaaagtattaaaaatggaATTTAGTTCATCAGTCACCACAAGTTTGGATGAAGGCCAGCATATACGTCTTCCCTTGTCTATAATTGTGCCTTAAAAGTCTGGCCACTAgatattattactgtttatgttgaaaaaattttttaaattagatcgGAGTTTAACATTAAACTTCCACTTGTTGTCAAACTGTTTTAAATTCTATTAGGCAGATTAGAAATGTAAGTATTCCCAAATTCCACTTGGGTAGAAGAATAGTCAGATCTGTGACTCATTTAATGTCTGCTCATTTTTGATTTATGCATCTATGATTGTAATGATTTCTAGATGTCATAATTATGGTTGTAAATGTTACATGTGTCACTGACTGCTGTCACTGTAGCTTATCTTTCTGATTCTGCTTATTAGAAAACCAACAGAGCACCACATGCTTTTCTTCAGTTGTACTTGGTTTATAGTCAGATGGGGTTTTTCAATTCCACACTCCAAGACTATTAGTttgatttatcattttaaatggtctgGGACTTAATGTAACACacattgtctcagaaaatggATTGAAAGTGGTTCAggtgtttgtctatttttgcCTTTACTTCATAGTACTTGAGTAATATCTGAGGAAGAAGGGAAATGACAAAACTTTGCCCATGCTTCTATCTGCCTGACCAATAACTTTAGTATGTTAACAACATTATTCATATATTGTTATTGTCCAGCAaattctctgcattatttgacaCAGTAGCTGTTGCATTATGTGGACCACATGAGATGAATTGACCAAttgaaatgctctaaattactttgAATAAACTCTCTTTGCATTGACACAAGCAAAAAACGacatttgcctttgtttgtAAAGTTGGCAACAATCACATTATTTCTAAATGATTTGTTCTGGTTGCCTTTACTCTAAATAATATCGGAAAAATCTGATGCAATTCTCTCAAACACTTTGTGTGGAACATCTATATGTATGGCAGTCAGTGTGAAACACTGCAGGGCACAGGTGTTGGCATGTGTTTAGTAATGCaggtctgctttttttttttttaaactttcatGTTCTCACTGAACTGAACGGAATATTGTCAGAGGGTGGAGCACACCCAGGTAATTCCTGACCCAGTGCAAGTCACTGCCTAGCATTTAAATTTTCTTCAGGAATTCTCCATCGGTTGGCATATTGTAAAGAcgttatttcttgtttgtttgtgttattGAACCATATCTAATTGGGTATTTTTCCTGGGAGAATGGAACTACTGAGGCCTAACTACAGTTAGTTCTGCcttttatgtatgtgtttgttattttgtacATGCAGCAGGTCTATTGTGAGCAAAAACACATGGTAAAAGCGGTAATCAGGCTTTTTGTGGCAGCTAAATGTTAACCACTACTTTGTGACTGTAAGTTTTGCCAAATCGTTTGCAGGTTTCGGTTTTAGGAGATGTAGACTGTAAATGCTTCCAAATGATTGGATAGCCTCATTGTATTGCCTTCAAGAATGGTTCAATGTCCATGTAACCAAACATGTCTAACGATTCACAGATATCTTTCACAGAACCACATGGGAATCTTGTTGTTTTTCAAAATGTGGCATAAgaaccttgttttaaatgttctgatGTTTTGTCAGCCTTTCTCTCAGGCAGGTGGTAACTTCTACAGTAGCCTACTTGGATTTATCGACTCTTTAGCCAGTTAACTTGCCTTCTGTAGCAGGGACTTCAATTGACCATTTATTTGTTAAGTCCAGTAGCTTAAAACTCTTTAGCACATTAGTGTCTCTTTAATCTTAGTGAATGTGTTCTGTAGTTCTGATACTGTCTGTGTTGCTGTGTGCTTAAAAACAGTCAAAAGCATGGCTTAAACAGTTGAAATACAGCAACAGGGCAGTTCAGGGCTGATCAGCCTTTAATACAGGTTGTAATAAATTGAAATCTTTGCTGAACGCTAAGTGCTTGACTGTACCTTTCATTTTAATACCAAAAGGCCTCTGCTTTGAGAACTCACTCGTACAGCTGTGCAAAGGTTCTGGCTTATAGCTTTCCAAATATGCAATCTTTTTATTGTTGTCTTTGCTGTTTTTATGGTTGTCTTTAAAAACCTTTGTGTGCAAAGAGGTGGATTATTACATCACATAATATATAGGCAGCtgcattttttcttatttactttattactttctaTTTTCTGTTATTGAGCTATTTGTGACCATtctctgtaaaatatttattaatgtatatttgaaGTTCCAAaatgttcctttttttaaaaaaaacatatttatgaaACTGTATGTTTGAATCCCACATTTCATGTAACACTTATACAGACAACCCATTCTCCTGTAGTCTTCCATGAGAGTATCTGTAAAAATAGGCCCCAAATGATGTTTAGGATTTTAGTAGTATGATTAAACCTCCTTAAAATCACGATCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35832 lncRNA downstream 25741 46361718 ~ 46361918 (-) True G26663
TU35757 lncRNA downstream 225560 46076136 ~ 46162099 (-) True G26605
TU35764 lncRNA downstream 320471 46066648 ~ 46067188 (-) True G26612
TU35706 lncRNA downstream 538067 45847617 ~ 45849592 (-) True G26564
TU35704 lncRNA downstream 542728 45843174 ~ 45844931 (-) True G26563
TU35837 lncRNA upstream 894 46395961 ~ 46409064 (-) True G26666
TU35838 lncRNA upstream 894 46395961 ~ 46409064 (-) False G26666
XR_002652516.1 lncRNA upstream 183220 46578287 ~ 46599431 (-) True LOC111197648
TU35951 lncRNA upstream 267052 46662119 ~ 46663963 (-) True G26751
TU35974 lncRNA upstream 710248 47105315 ~ 47106324 (-) True G26771
XM_022678311.1 mRNA downstream 12742 46364129 ~ 46374917 (-) True LOC111194350
XM_007230704.3 mRNA downstream 26833 46352209 ~ 46360826 (-) False LOC103043020
XM_022687038.1 mRNA downstream 26833 46352209 ~ 46360826 (-) True LOC103043020
XM_022687006.1 mRNA downstream 50118 46329406 ~ 46337541 (-) True LOC103042705
XM_015601184.2 mRNA downstream 58549 46317964 ~ 46329110 (-) True LOC103029737
XM_022687064.1 mRNA upstream 1432 46396499 ~ 46404613 (-) True LOC107197829
XM_022687087.1 mRNA upstream 15389 46410456 ~ 46416421 (-) True actr10
XM_015607841.2 mRNA upstream 35410 46430477 ~ 46435925 (-) True naa30
XM_007230721.3 mRNA upstream 85578 46480645 ~ 46499667 (-) True peli2
XM_007230722.3 mRNA upstream 117572 46512639 ~ 46514813 (-) True LOC103047706
TU35796 other downstream 94853 46292087 ~ 46292806 (-) True G26636
TU35737 other downstream 452037 45935153 ~ 45935622 (-) True G26588
TU35470 other downstream 950074 45436109 ~ 45437585 (-) True G26388
TU35363 other downstream 1501858 44882778 ~ 44885801 (-) True G26295
TU35356 other downstream 1516980 44867094 ~ 44870679 (-) False ubxn2a
XR_001518806.2 other upstream 32350 46427417 ~ 46435925 (-) False naa30
TU35879 other upstream 123804 46518871 ~ 46521243 (-) False G26695
TU35877 other upstream 128581 46523648 ~ 46525996 (-) True G26695
TU35943 other upstream 138628 46533695 ~ 46535753 (-) True fkbp3
TU35957 other upstream 309280 46704347 ~ 46738736 (-) True G26754

Expression Profile