RNA id: XM_007230722.3


Basic Information

Item Value
RNA id XM_007230722.3
length 2011
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC103047706
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46512639 ~ 46514813 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaatgtgttttaaaaaatcctCTTTTATCGCTTTTTGTTCAGCGTTAAAACTCCACATCACCGGTTGGTTTATACCGTGTGTTTAGAGCTCGGCTCCGCTGCAGTTTTTTGTCTGTTATAAACAGCGGAAACTCGGGGTAGCTGCAGTAGTGTTATCTGTATGGCGGGCGCTTCTCTGGGCTGGACGCTGGAGAGCGCTGCTGCTGTGAGCAGAGGAAGTGGCGGGTGAAGCAGGTCCGCACCTTTTCCGGTAACACAGCTCCACCGcggctcagagagagagagagactcggagaggggaagagaaagagagagagaggaggtctGGGGAGCGGGGGAGCGACCgccgcgttttgaagggtgaggagagaagagagagagaggggaggacgGAAACTCGAAGGAATCAATGACCTCTGGAGTTCTCCCGGGCGCTTTTCTTCAGACTCCGCTCCTCTGGTTCGCCATTAAAGACCGTATTCGTGGGCATGAACTCCTCCTGAAGCGGATCCCGCCGCTCGAGCGCGCCGGATAGAGCGCGGGGGACAGCCGGCACTCCACCAGCTATACTACAAGAAGGAAGTCTGAACTACTGCTGCGGACTGTCGAGAGGGCCTGCTCAAGCGCCGCAGCTTCTAATCTCAAGTCTACGATAGCCCACGCTGTCTCAGCAGCAGCCCTGCACCCAGCCTGAGAGTGGACCTGAAGGACCTACCCTTGGCCAGCTGACACCAAATAAACAAAAGGTGCCCCTTTTGTTGAGCTACCAGCAGCACTCTGAGGAGACAGGTTAAATAAGGCTGCTAATCCACACCCTCTGCTGAGcacgttttttctttttcttcaaacTTCgtgtggtttgtttgtttgttcttctCTCATGTGTTTCACTCATTCGTCTAAAAGAACTGTGCTAAACCAATGAGAAGGTGTTGTCCTCCTCTTTTTTTCATCCTTCATTTGGTGACAACACAGCCTGTCTCGTTCCTCAGCCATTGAAGAGTGTTACTACTGTTTGTACTCAAGCAATATTCTATTTCTGTTACAGTATCTCTATCTAAAGCATTGTGGTGTTACATCCAAAAAAGACAAGTATTAAAGTAGCACATAACCTCGCCAAAGGTACATAACCACCCAAAGAAGCCTGGACCGtccctctcttttctccctAATAACCATAATATATGCACAGCCAACAAGATGGGGAAAATGCTTTCAAAAATCTTCGGCAACAAAGAGATGAGAATATTGATGCTTGGACTTGACGCAGCCGGCAAGACCACAATCCTTTACAAACTGAAACTCGGACAGTCCGTCACCACTATCCCAACCGTCGGTTTCAATGTGGAAACGGTCACCTATAAGAATGTTAAGTTTAACGTGTGGGATGTGGGCGGACAGGACAAGATCAGACCCCTGTGGCGGCACTACTACACAGGCACTCAGGGGCTCATCTTTGTGGTGGACTGTGCTGACAGAGATCGCATTGATGAGGCTCGACAGGAGCTGCACCGCATCATCAACGACCGAGAAATGAGGGATGCGATCATCTTGATCTTCGCCAACAAGCAAGACCTTCCTGATGCAATGAAACCCCACGAGATCCAAGAGAAGCTCGGGTTGACCCGCATTCGAGATAGAAATTGGTACGTTCAACCCTCTTGTGCCACGACAGGTGATGGACTGTATGAGGGGCTGACTTGGCTCACTTCAAATTATAAATCTTAATGTACTGTTCAGTTGAACTGGTCAgtgcaaaagagaaaaaaagaagaaaaaaaaaacaatgaaactgaagatTTAACAAATAACTTTGCTTCTCAAATCAGTCAGCAAAAAGAAGTTTGATTATAATCTTGTTAATTTTGATGACTccctgtaatgtttttttttctcttttctataCTGTACCAATCCTCTCAGCTGGCTCTTACATTTGCTTTGGCACTATTATAATTCTAAATGACAACTACCATCTCACAATATTACATAAAGTATTGTTTTGAAGGTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0031529 ruffle organization biological_process
GO:0035020 regulation of Rac protein signal transduction biological_process
GO:0051489 regulation of filopodium assembly biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0060998 regulation of dendritic spine development biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0001889 liver development biological_process
GO:0033028 myeloid cell apoptotic process biological_process
GO:0090162 establishment of epithelial cell polarity biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0097284 hepatocyte apoptotic process biological_process
GO:0001726 ruffle cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0031527 filopodium membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005938 cell cortex cellular_component
GO:0010008 endosome membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0031996 thioesterase binding molecular_function

KEGG:

id description
K07941 ARF6; ADP-ribosylation factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35837 lncRNA downstream 103575 46395961 ~ 46409064 (-) True G26666
TU35838 lncRNA downstream 103575 46395961 ~ 46409064 (-) False G26666
TU35832 lncRNA downstream 150721 46361718 ~ 46361918 (-) True G26663
TU35757 lncRNA downstream 350540 46076136 ~ 46162099 (-) True G26605
TU35764 lncRNA downstream 445451 46066648 ~ 46067188 (-) True G26612
XR_002652516.1 lncRNA upstream 63474 46578287 ~ 46599431 (-) True LOC111197648
TU35951 lncRNA upstream 147306 46662119 ~ 46663963 (-) True G26751
TU35974 lncRNA upstream 590502 47105315 ~ 47106324 (-) True G26771
TU35987 lncRNA upstream 602769 47117582 ~ 47120006 (-) True G26783
TU36023 lncRNA upstream 684051 47198864 ~ 47199418 (-) True G26810
XM_007230721.3 mRNA downstream 12972 46480645 ~ 46499667 (-) True peli2
XM_015607841.2 mRNA downstream 76714 46430477 ~ 46435925 (-) True naa30
XM_022687087.1 mRNA downstream 96218 46410456 ~ 46416421 (-) True actr10
XM_022687064.1 mRNA downstream 108026 46396499 ~ 46404613 (-) True LOC107197829
XM_007230708.3 mRNA downstream 117572 46387659 ~ 46395067 (-) False LOC103044046
XM_022678319.1 mRNA upstream 18993 46533806 ~ 46535835 (-) False fkbp3
XM_007230730.3 mRNA upstream 130824 46645637 ~ 46936593 (-) True LOC103022574
XM_007255391.3 mRNA upstream 574736 47089549 ~ 47094904 (-) True LOC103045279
XM_007255387.3 mRNA upstream 581283 47096096 ~ 47101631 (-) True LOC103044065
XM_007255389.3 mRNA upstream 607355 47122168 ~ 47124470 (-) True LOC103044766
XR_001518806.2 other downstream 76714 46427417 ~ 46435925 (-) False naa30
TU35796 other downstream 219833 46292087 ~ 46292806 (-) True G26636
TU35737 other downstream 577017 45935153 ~ 45935622 (-) True G26588
TU35470 other downstream 1075054 45436109 ~ 45437585 (-) True G26388
TU35363 other downstream 1626838 44882778 ~ 44885801 (-) True G26295
TU35879 other upstream 4058 46518871 ~ 46521243 (-) False G26695
TU35877 other upstream 8835 46523648 ~ 46525996 (-) True G26695
TU35943 other upstream 18882 46533695 ~ 46535753 (-) True fkbp3
TU35957 other upstream 189534 46704347 ~ 46738736 (-) True G26754
TU36479 other upstream 2372181 48886994 ~ 48891028 (-) True G27145

Expression Profile