RNA id: XM_007230723.2


Basic Information

Item Value
RNA id XM_007230723.2
length 2634
RNA type mRNA
GC content 0.46
exon number 14
gene id prpf39
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46519113 ~ 46525826 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGAACACTCTGACCTGGATCTTTCAGACGAGCCCATGACGGGGATGGTTAATGCAGACACCCCTGACAATGGGGACTCTAATGCTGTGGAAGGTGCAGGGGATAGTTTCATTTCAAACCTTCCCAACTTAACCCAGGATGCTCAGTGGACAATGGACCAAGTTCCTGGCACACTTGCTGCTCTTGCAAGCCAGCAGGTTGCAGGACAAGAGGGGGAGAAGTTCTCAGTGGATGAGCCTTTAAAATCAGTCGAGCAAAAATCTGATGTTCCTGAACAAAATGCCTCTGAACAACCTGAAAATTCTGTTTGTGTTGCTGAAACAAATGGACAAACTGCAGAGCTGAGCTCTGTAATGCAGACCGAGTTGGACAGTTCCGAAAGTCCTGCGAACATGGAACTTGAGGATGCATCCAAAGAAGAAAGTGAGGAAGCTGTGGGTGATGCGGCGGGTGATGCTGCTGAGGGAAAAGAGGCAATGCCTTCTGACTTTGACCGGCTATACAAAGTAGTCGAGGATAACCCTGAAGATTTTAATGGATGGGTCTACCTTCTGCAGTATGTGGAACAAGAAAACCACATTTTGGCTTCAAGAAGGGCATTTGATGCCTTTTTCCTTCACTATCCATACTGCTATGGTTACTGGAAGAAATACGCAGACATTGAGAAAAAGCATGGTTTCATACAGGAAGCAGATGAgGTGTACCGAAGAGGTTTACAGGCCATCCCGCTTAGCGTTGACTTGTGGCTTCACTACATAGCTTTTCTAAGGGAGAACCAAGACAACAGTGACGGAGAAGCTGAAAGCCGCATACGAGCTGCGTATGAGCATGCAGTCCTAGCTGCGGGTACTGATTTCCGGTCAGATCGTCTGTGGGAAGCTTATATCAACTGGGAGACTGAACAGGAGAAGCTGGCCAACGTTACAGCTGTCTATGACCGTATCCTGGGTATTCCCACACAGCTGTATTCTCAGCATTTCCAGAGgtttaaagATCATGTGCAGAATGGTAATCCCAAGCACTTTCTATCCGAAGAGGAGTTTGTGCAGCTTAGGTTGGAGCTTGCTGCTGCCAATAAGCCCACTGTTGAGGGAGAGGAAGAAGCCCCCAGTGAAGAGCTTCCACCAGGCACTGAAGACCTCCCTGACCCTGCAAAGAGAGTCACGGAGATCGAGAATATGCGGCATAAGGTGATCGAGGCACGGCAAGAGATATTTAACCACAATGAGCATGAAGTCAGCAAGCGCTGGGCTTTTGAGGAAGGGATCAAGCGTCCATATTTCCACGTAAAGGCCTTGGAGAAAACTCAGCTCAGCAACTGGAGGGAGTATCTGGACTTTGAACTGGAGAATGGGACACCTGAACGTGTAGTGGTTCTGTTTGAGCGCTGCCTGATCGCCTGTGCCCTTTATGAGGAATTCTGGATAAAGTATGCCAAGTACTTAGAGAGCTACAGTACAGAGGGAGTGAGACATGTGTACAAGAAAGCATGCACCATCCACCTGCCCAAGAAGGCCAACATCCATTTTCTCTGGGCAGCCTTTGAGGAACAACAAGGGAACATTGAGGAAGCACGAGGCATCCTGAAAAGCCTAGAGGAGTCAGTTCCAGGCCTGGCCATGGTGAGACTACGTCGGGTGAGTCTGGAGCGTCGACATGGTAATTTGGATGAAGCGGAGACACTCCTGCGGGACGCTATTCAGAATGGAAAAAATGCAACAGAATCATCATTCTACTCTGTGAAACTAGCAAGACAGCTCCTCAAAGTGCAGCGGAGTATTGGAAAGGCTAGAAAAGTACTGCTAGAAGCCATAGAAAAAGATGAGACCAGTCCTAAGCTGTACCTAAACTTGCTGGAGTTGGAGTACAGTGGAGATGTACAGCAAAATGAAGCAGAAATCCTGGCGTGCTTTGATCGTGCCATCAACAGTTCAATGCAACTGGAGTCACGTATCACTTTCTCACAGCGTAAAGTGGACTTTCTAGAAGATTTTGGCAGTGACATAAAtgtGCTTGTGGCTGCGTATGAACAACACCAGAAACTTCTGAAAGAACAAGACTCAtcaaaaagaaaagcagagaaTGGGTCTCAAGAACCAGACTCAAAAAGACAGCGTGTGGATGATGCCTCTGGAGCATCGGGTCAGGTGGCTCCAGACATGCAAGCCAACCATGGGTACAACTATAACAACTGGTATCAGCAGTACAACGCCTGGGGAACCCAAAATTCCTGGGGCCAGTATGGCCAGTATCAGTATAACCAGTACTATCCCCCACCCCCCACATGATGACATGAAGTATAATTGAACTTTGTCCTTTTTATCCATTCTTACTGATTCTCATGACATTCTCAGTCATTTgacagtttactttgtgttttttgagtATGTGTTGCAAATGAGTTTTTCTTCTGTGGAAAATGTGCAGATAAGTTTAATTTTAGCCTAATTTAGCGTGGTCTCTTTTTGGAAACTTGGTAGTTTGACCGTTTTTGTATGGAAAATCTCAACTTTAATTCTTTAACTTTCTCTGCTCTCCTTAATGTGATGTCTTCATGTTTTCAGAGCCCAaagtaaaatgaagtttttAGTTTGACCTTTTGAATTTCATAATAAAGAGATTGGTATCCTTGa

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K13217 PRPF39, PRP39; pre-mRNA-processing factor 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35868 lncRNA upstream 4274 46511285 ~ 46514839 (+) True G26687
TU35860 lncRNA upstream 38722 46480191 ~ 46480391 (+) True G26679
TU35839 lncRNA upstream 108238 46410431 ~ 46410875 (+) True G26667
TU35653 lncRNA upstream 109123 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA upstream 109123 46409333 ~ 46409990 (+) True G26529
TU35894 lncRNA downstream 4697 46530523 ~ 46549553 (+) False fau
TU35895 lncRNA downstream 7982 46533808 ~ 46535925 (+) False G26705
TU35896 lncRNA downstream 7982 46533808 ~ 46534942 (+) True G26705
TU35903 lncRNA downstream 58197 46584023 ~ 46623216 (+) True G26710
TU35910 lncRNA downstream 136311 46662137 ~ 46663431 (+) True G26717
XM_007230719.3 mRNA upstream 58299 46456013 ~ 46460814 (+) True otx2
XM_022687080.1 mRNA upstream 89064 46420148 ~ 46430049 (+) True c3h14orf37
XM_007230715.3 mRNA upstream 89064 46420151 ~ 46430049 (+) False c3h14orf37
XM_007230718.3 mRNA upstream 89064 46420152 ~ 46430049 (+) False c3h14orf37
XM_007230717.3 mRNA upstream 89064 46420152 ~ 46430049 (+) False c3h14orf37
XM_007230724.3 mRNA downstream 2542 46528368 ~ 46530912 (+) False fau
XM_015607871.2 mRNA downstream 2570 46528396 ~ 46530912 (+) False fau
XM_007230725.3 mRNA downstream 2597 46528423 ~ 46530912 (+) True fau
XM_022687128.1 mRNA downstream 2657 46528483 ~ 46530912 (+) False fau
XM_007255388.3 mRNA downstream 589626 47115452 ~ 47119014 (+) True LOC103044458
TU34777 other upstream 3024798 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 3094207 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 3097067 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 3155669 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 4002556 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 2569 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 1752441 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 1754939 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2029971 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2029971 48555797 ~ 48641905 (+) False G26995

Expression Profile