RNA id: XM_007230730.3


Basic Information

Item Value
RNA id XM_007230730.3
length 8686
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC103022574
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46645637 ~ 46936593 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcgagtgtgtgtgcaggcTTCCATACAGATGAGAGCTGCAAGTCACGCACTGCCTGACGTAGCGAAGCACCGGCTGCGTTTCCATAGCGCGTGTATTGCGCAACCGGACGGACGGATCGGcagtccagcagcagcagtagctgtCCGCGAGCCTGAGCCTGCACCTCGAGCTGaatatttgtgattttttttaacagtattttaactgtttttgttattaatattgtccgcactgtgttttttttattttgtattatttcttatttattttttgcaatcgCTGACAGTAAGCTTGTATGGGAGTCGTGGCGTTGCCGGGTGCACGCGCATCGTTTCTCGCGCCCGGGCTGCTCGTGTCGTCGCTCCAGGGATGCGGCCGTGAGAGGAGCGCGCGGaataggaggaggaggagcgtCGGGGGCGAGCGGCGCGCGGCTGCACAAACTTTACGGCCGCGGCCCTGAAGCCGGCGGTTGGACGCGCGAGCCAGCGTGTGCGCGAGCCAGCGTGGGGACGCCTCgtttaaaaaacaacacacgCTCCAAAATAACGGACAACAGCAGcaaaagaggaggaagaggggaCAGCGCCGTTACTACTGACtgagagaaagcgagaaagagagggagagaccaagacactgaggtgtgtgtgtgtatattttaaagagggatagagagagagaaaaagagaaagagagggagagctcTCCGCTGCCAGCGTATGCTACGCTCGGCGTCAGAGACATATTAGTTAGCTACTGGGTCGCTGCTGGTTTCACGCCagccactgactgactgactgtttTGACTTTGAGCTCACAAGCAACAGACGAAGAAAAAAGAAGGGAGGAACACGAGGacgagaggaaaagagaagggAAAAGAAGGACACATATCTCCCTCTTTCACACAGCTTTCACTCCTTGTATAGGCTACAGCCTACCACATACTCTGGTGTGGTGTGTCCAATCCTCCAGttctcaccctcacacactcagaCAGCTTCAGCTAAGCTCCAGCCTCTCTGCCCGAGCCGAACCGAGAGCGAGCCGCCGACACAGCTGCCGCTGCCCGCCGTCCCCTCCTCCCCGGACCCCGGACTGCTCGCCTCTGAACTAGCCAGCTATGTCGAGATCCTCCACGTAAAGCATGGATGGGATTATTATCAGTGTGCTGGGGCTCGTCGCGCTCATGCTGGAAGGCGCCTGCTGCCAGGGAGTGTACGCTCCCCCTTCTGTCCGGATTGTGTACTCCGGGCATGCATGTAACGTGGAGGAGGAGCGCAACACAGAACGAGTGTACACCATCCGAGAGGGTGAGACCCTCGAGCTCACCTGCCTGGTAACTGGACACCCCCGGCCACAGATTCGATGGACAAAGACAGCAGGCAGCGTGTCAGACCGATTTCAGGACTCAAGTGTTTTCAATGAGACTCTTCACATCGCCAAGATCCAGAGGAACCAAGGCGGACGCTACTACTGCAAGGCAGAGAACGGCCTGGGCTCACCAGCCATTAAGTCCATCAGAGTGGACGTCTACTactTGGATGATCCAGTGGTAACAGTCCATCAGAGTATAGGAGAAGCCAAAGAGCAGTTTTACTATGAAAGGACTGTCTTCCTTCGCTGCGTGGCCAACTCCAACCCTCCGGTGCGCTACAGCTGGCACAGGGGCCGGGATGTGCTGTCTCAGGGTTCAGACAAGGGTGTTGAGATCTACGAACCTTTCTTCACACAGGGGGAGACTAAGATCCTGAAGTTGAAGAACCTGAGACCCAAGGACTACGCCAACTACAGCTGCATCGCCTCTGTACGCAGTGTGTGCGGCATCCCTGACCGCAGGGTCATCTTCAGACTCACCAATAAAacagCCTCCCCGTCCATCAAGCTGCTGGTAGAGGATCCGATCGTGGTGAACCCTGGACAGACAGTGTCTTTAGTGTGTATTGCCACAGGTGGTGTGCCCACTcccaacctcacctggagcagcAGCTCGGAGAAGCTCCCGGAGAAGAGTGTGGTGAAAGACGGCACCCTCACGCTGCCGGCCATCTCCTCTGAGGACGCCGGCGTTTACAGCTGCATTGCCAGCAACAACGTAGGAAATCCAGCTaagaagtccaccaccatcgtagTACGAGctctgaAGAAGGGCCGTTTCTGGATCACGCCCGATCCGTACCACAATGACGACAACATTCAGATCGGCCGTGAGGTAAAGATTTCCTGCCAGGTGGAAGCCACGCCCCCCGAGGAGCTGCTGTTCAGCTGGTTGAAGAACGGCCGGGCTCTGCGCAGCTCCGAGCGCATGGTCATCACCCAGACTGACCCTGACATCTCCCCAGGCACCACTAATCTGGACATCATCGATCTGAAGTTCACCGACTTTGGCACCTACACCTGCGTGGCGTCGCTTCGCGGCGGGGGCATTCCAGAGATCAGCATCGACGTTAACATCTCCTCCACCACTGTTCCCCCCAACCTGACCGTCCCACGGGGCAAGTCCCCACTGGTGGTGCGGGAGGGCGAGACGGTGGAGCTGGAGTGCCTTGTTTCAGGAAAGCCCAAGCCCATCATCCTGTGGTCGCGGGCCGACAAGGAGGTGCCCATGCCGGACGGGAGCATGCAGATGGAGAGCTACGACGGGGTGCTGCGGATCGTCAACGTGTCCCGCGAGATGACCGGATCCTACCGGTGCCAGACCAGCCAGTACAACGGCTTCAATGTCAAGCCTCGAGAAGCTGTGGTGGAGCTTATAGTACAATATCCTCCAGCAGTGGAGCCTGTGTGGTCAGAGGTGCGGCAGGGTCTGAACCGGCCGGTGGCTATGAGCTGCAGGGTGCTCCGGGCTCACCCTTCACGGGTGCTGCGCTACGAGTGGCGTCTGGGCTCTCGGCTGCTCCACGCAGGACACTTTGACACACGTGACGAGACGGAGTACACGGTGCGCAGCCTGACCCGCGAGGGATATGGAGAATACACCTGCGACATCATTAACGAGGCCGGAGCCGGACGCTGCACCTTCTTAGTCACAGGGAAAGCGTATCATCCGGAATTTTACTACGACACCTATAGCCCTCTGTGGCAGAACCGACCAAGGGTTTATGGGTTCAAGCTGCAGTGGACCCAGATGAACCCCGACGCTGTAGACCGAATCATGGCGTACCGCTTGGGCATACGACAGACTGGGCAGCAGCGGTGGTGGGAGCAGGAAATCACTGTGGAAGCTCCTATACAGAAAGGAGAACTCATCACCTACAACCTGACAGAGCTCATCAGACCTGAGGCCTATGAGGTGCGTCTGACCCCCATCACACGCTTCGGCGAGGGAGACTTCACCATCAGGATGGTCACCTACAGTGCTCCCATTAACCCACATCTGAGGGAATTTCACTGCAGTTTCGAGGAGGAGCCCATGTGCATGTTCACTCAGGACAAGAACGACAACTTTGACTGGACCAGACACAGCGCTGCCACACGAGACACCAAATACACCCCCAACACAGGGCCTAGCGGAGACCGCGCTGGATCTAAACAGGGTTTCTACATGTACATAGAGACCTCCAGACCTCGTAAAGATGGAGAGAAGGCCAGGCTGCTGAGCCCCACCTTCAACGTGGCCCCTAAAAATCCTTATGGCATCACCAACCCTCCTGCGTACTGCTTTGGCTTTTATTACCACATGTATGGAAAACATATCGGTACACTGAATGCATTCATGAAGCAGAAAGGCCAGGCCACTGCAGACGCTGGTCCAGTCTGGTCACTCAGTGGAAACCAGGGCGATCGGTGGAGACAGGCCAAAATCAGCATCCACCCCACTTCCTCCTTCCAGGTGATTTTTGAAGGCATCCGAGGTCCAGGGATTGAAGGGGACATCgctattgatgatgtcactttgGAAGAGGGGGAGTGTCCCGACCCACCGTCCAATCATATCAGATCGAGGGCTTCATCCAGAGCAACGCATATATGGCCGTTATGCACCGCCCTGGTTCTCACACTGTTTCGAGGTCAGAGGTGACCACCAGGTGTGGTGGAGACTGGTGACAGCGTCCACGTCTGTGTCCCTGTACCCTCAATATATAATCACCAAAGATTCATACATTCAGATTGCTGAGAGGGACGCAGCACTGGCTTCAACGCGGATtaacagaaacaacaacaaaaaaaaatcaataaaaaaaggaaaaaaacccAACACAAAAAAGTAATAAGGATTCGCAAAAATGTATCTTTTGAAAACAATCTGCAAACTCTGGTTCGGTAAGATGCTCGTGAGGACTGGGACGAGAGCACTTTTCTAACGGAGTAGCTGGTGCAGGAGGCGGGGCTCGTCAGGAAGGGCTTCCATGCAGACCTGAGGACAGTTTGTAAAGCACAAGGACAACTTTTCCAGCTGGCAGTAAAaaagctcatttaaaaaaaaagtggggaaACGAAAGGTGATGGCAGTCTCCCCTCGCTCTTTACTACGAACACTTTTCAGTGTGTCATCCTTTCTGTCCTTCGTCATATACTCTCATCACCACCCTCTCTTCAGTTAACAATGggatttttaccttattttggCTTGGTGCTTTAGAAACACAGATAAAATGAAcagtggagaaaaaaatatctgatacCTGCTTTATATCCCTCTACCTGAGTAGCTGCCTATTTTGATTTCACAACACTGTGCTCACACCCCCTAGGGGCAGGCCAGGGGTAGGAGATTGGGTCAGAGGTCACTGGGAGCGAGCAAGCAGTGGTGaaggaggagggagaggaggtGAGAGGAGGAGAAGGCTGACGTGTGAAGGGCCTGAGGCAGGAGGCCATGGAGTTTGGAGAGAGCTGGAGTAGGTCATGAtgatgaggaagaagaagaagaagaaatagaagaagaagaaacagcaTTTCCTCTCCTCCTTTATTCTCCACTGCCAGAAAAGTGACATAATCAGTGCCACTTTCTGCCATGACATATAAAGTGCCTTCAGATTATTAACAGAATCGTGAGCCTGGCCATTAACACCAATGTCAATGTTTCTAATGTCACCGATGGGCTATTTTATACACGATTATTTTGCTCCTTCAAGTGCTGATTTGAATGGCACGACCATTTGCGTTGGAGATCAGAGAGGACCCCAGACGTCAGCACAACAGCCTGCCAGCGAGCAACTCCCAGCAGCGCAGAGGTGGGTTTAGGGCAGGTCCTTCTTAATGTAGGTAGCCTCGGCCTCTGCGGCTACGGTAAAGACGCTCATTCTCCATGGCTGCCATCACACTGTAACATAGCCGTTGTGCTGTACTGGGAACAAAGCAGGCCTCCGGACGCCTGCCATGACCAATGATTTAGAGATGGAGTCTCCTCAAATGGGCCTTATATGAACACTATGAGATAAACCCAATAGTACACCACCAAGGAGGTAACCAGCAGGCAGCGAAGCCCACATCACATAGACCGACTGTCCCTACCCATGCCTCTGCCATTTATATAATGAACAATGTACATTCTGAAAGAAAaagatattaataattataataatattttattactctAGCGAgaatgtttctctgattttacacaAACTGTGAAAAATAAACTGTGGAAAAATCTACCTGAGAGTATCCATAACCAGCTGGTTTTTAAAaacttattgtaaaaaaaaaaaactaaaaaaaaattcagaaagaaaagcaaatgaacatttacatatattgttggttatgaacaaaaaaaaatgttttgaggaGCTGTgtcttgtttcttatttttatgttcAAACTGTTATGACTTTTAACTTTCTTTAATTCCTCGTCGTCTCCCTTGCATTGCTAAAATATCGAAATGGCCGGAAACATATTGATTAAAGTCAGTTTGGTAAATGTATAACTTGTATGTGTAAAGAAAGCTCTGTTAATCAAGGTTTATATGAAATGTTTATGTATGACTTACAGGAAGCACAAGATTTAGGGTTCAACGTTTAAAATGCAGTATAAACTCATATATGTGACTTTCTTATTACAAAGCCAGGCGTAACAAAATTGGAGAGGCATTGAATTGAACTGAAGTGTCTGTAGTGCACACCCATACAGTAGTCACATGTGCACAGTGCTTCTGTTCAAACGCTCTATTGTTTAACCTgaagaggcttttttttttgtctttttacttGACACTCCAGCTGCTTTTGACTTTTGTTTCCATTACAGTTACAGCAACACTCCGCTCTCTTTACTCGTGGCTTTGCTGCTGTGAATCTGTGAAAGCTCTGCTAGTAACAATTATGTCAGTTCCATGTAGAGAGACATCAGTACtgtgatgtttgtgtgtgtgtacacatgtTCATTTAAAGAGGCACACTCTAAATTCATTATTTCATCTTTATATACCCCGACTGATGAAGAGTTTAAATGGAGATAGAAAGCAATGACagggtttcttttattttagaaatgtttcACAATCTTGGTTTTGTCAGAGCGAGTCACATATATGTCCTGGTATATGCAGTGTACAATAGGTGTGTTAggaaacaatacaatacatgtagaagatgtgaacaaagcagagCACAATGATCTATAGTCATTACAGGACATGCTAAACCCCTTTCCCTGCTTACGATGGAATCGATCCACAGGACATTCTGGAGATCCTTCCAGTCTGCATCTCACTTCCATGGTTCAAAGCATTTTGTAAGAATCACACAGGAATTAAACACAGAGGTTGTATGATGTGTGAATTACACTTACACAAATAGACATCAAAGCAGGAAACATTCACTATAAGGATCTCCTATGTTAATAGTCACCAAAACCTTTTCCTGGAGATCTTTCTTTCTCCAGGTGGGTTTCAGCGCCAACCCAAATCCAGCTCCTCAGTCTCTCAAGTAGTCTGGATTAGGGTTGGAGCACAGAGCAGGTTTTTTTGAGTTAAATGATCTGAATGAAGTGATATTGCCATTTTGCATATGGGTTGCCATATTGGTCACATGTCATAATAGAGGAAAAGCAAGTCACCACAGATGATGGTGTTGCAAGTAGGGGAAAGAGAGGCACAAACTAACACAGGAAACTGTAGCATGGATATGTTATGTAGTAAAATAGTGCACATTTAAGTGCAACATGATTTTGCTCTTCTTTTAGGATCCTCATATGTCCATATGTCCATTAAATATGATTGTAATTGGACAGATATTTTGCAAGATTTGCCTCATAATTCACatctgtattatttagtatttaatatttaatatatatatatttttttattggtggCTTTAGTAAAGCTGCTTTGAAGCATCTAAATGTAATATGTTAGTACAGACTCCACATACAGTGGGGTTATTTTTAGCTCATTCACTTTTTGGACGTTTTTTTCTGCACAGATTTGTCATAAAcactactttttatttttttttataatttgtcaATTCCAGAAACTAAGTTTACATTATAAAATAGTATTTATCTCCATcaagtaatgtttaaaaattgctaagcaacaaaacaaaatgttaatttgtGACCTGCTCTCCCCAACTGTGCAATTTTGCAAGCAATTTGGCtaattcaagtttttttttgctgatttgcATCCAATAATCCTGCTAATTTTACtccgtatttttttttacacaggatTGAGAGCTTGTCCTTTCACTAAACTCCCCCATCCAAATGATTTAGTTTATTGATGCCTgataaatatttgtgtatatttctgtaattttagtgtaaaaaattaTGATCTCATGCCATTTAGTGGAAGTGCCCAACTGATTCCCCTACTGTTTCCAGAATTGATGAAGGAAAAAATGCTGGGGACACTTTAATCTCATCAGGTGTTAAAAGCGCAGCATATGGAGGAAAGGTGTGCCAAGATATTTATCAGTTATCCCTCACCGAAATTTAGCTGGAGCTCAGCTCTCGGTTTTAAGCCAAGTCTCTGGTATAAGGCCAAAAACCTGTTACCTCAACGCCACATGCACAAACCCATTAAAAAGACTTTGATGTTTGTTTGCCTACCTTGCAAATGATGTTTATGATTATAGCAACAACATCAGCTATGCGACATCAAAGTTCTCACAAGCCATctcatttcaattttaaattcgAGCCATTTagatactaaaatatatatatataaatatacggTGGCCAAAATCTGTCCGTGTTTTGATGTATAAAGCCCCCATATTCCTCAGAATATGCTACAGAATAatggaaaacaataaataaataacctgtTTCTTGCAGAAGTGCTGAGGGAATGATGTGTACGTTGGGAATGCTGTGTTAAAATCATTACTCAAATCTATGGATCACATTCACcatgtgtttttcagttgcatATAATGTCTGTCACTAAGATAAGGGCTTTTTAACGGCTGTTATTTAAGATCGCTCCTAAGTGATTAAAGCCAACAACAACATTGATAGCGTGACAAGGTCCTCCATTGCCttcgtgtgcgtgtgtgtgtgtatacgtttTGTATCTGACGAAACACACGTTATGAAAAATTCTGGGAAAAAGTGTATTAACTGTGAACTAACATCCTGTATTGACATGCCGTCATTGTACTCTGATTTGTGCTCTGTTTAGGCTTGTTTTCACTGTATTTCTTTGGATTCATCACCAATTTTTGTGCCATCCCTGCAactaatgataaaataataaaaaaaggtatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002652516.1 lncRNA downstream 46206 46578287 ~ 46599431 (-) True LOC111197648
TU35837 lncRNA downstream 236573 46395961 ~ 46409064 (-) True G26666
TU35838 lncRNA downstream 236573 46395961 ~ 46409064 (-) False G26666
TU35832 lncRNA downstream 283719 46361718 ~ 46361918 (-) True G26663
TU35757 lncRNA downstream 483538 46076136 ~ 46162099 (-) True G26605
TU35974 lncRNA upstream 168722 47105315 ~ 47106324 (-) True G26771
TU35987 lncRNA upstream 180989 47117582 ~ 47120006 (-) True G26783
TU36023 lncRNA upstream 262271 47198864 ~ 47199418 (-) True G26810
TU36041 lncRNA upstream 401828 47338421 ~ 47347966 (-) False G26826
TU36047 lncRNA upstream 401828 47338421 ~ 47347966 (-) True G26826
XM_022678319.1 mRNA downstream 109802 46533806 ~ 46535835 (-) False fkbp3
XM_007230722.3 mRNA downstream 130824 46512639 ~ 46514813 (-) True LOC103047706
XM_007230721.3 mRNA downstream 145970 46480645 ~ 46499667 (-) True peli2
XM_015607841.2 mRNA downstream 209712 46430477 ~ 46435925 (-) True naa30
XM_022687087.1 mRNA downstream 229216 46410456 ~ 46416421 (-) True actr10
XM_007255391.3 mRNA upstream 152956 47089549 ~ 47094904 (-) True LOC103045279
XM_007255387.3 mRNA upstream 159503 47096096 ~ 47101631 (-) True LOC103044065
XM_007255389.3 mRNA upstream 185575 47122168 ~ 47124470 (-) True LOC103044766
XM_007255386.3 mRNA upstream 189884 47126477 ~ 47128782 (-) True LOC103043748
XM_007255529.3 mRNA upstream 192477 47129070 ~ 47134301 (-) True LOC103033231
TU35943 other downstream 109884 46533695 ~ 46535753 (-) True fkbp3
TU35877 other downstream 119641 46523648 ~ 46525996 (-) True G26695
TU35879 other downstream 124394 46518871 ~ 46521243 (-) False G26695
XR_001518806.2 other downstream 209712 46427417 ~ 46435925 (-) False naa30
TU35796 other downstream 352831 46292087 ~ 46292806 (-) True G26636
TU36479 other upstream 1950401 48886994 ~ 48891028 (-) True G27145
XR_002649726.1 other upstream 2498319 49434912 ~ 49435653 (-) True LOC111191920
TU36629 other upstream 2702166 49638759 ~ 49639444 (-) True G27258
TU36630 other upstream 2702166 49638759 ~ 49639444 (-) False G27258
TU36802 other upstream 3545296 50481889 ~ 50531639 (-) True G27400

Expression Profile