RNA id: XM_007230922.3


Basic Information

Item Value
RNA id XM_007230922.3
length 4853
RNA type mRNA
GC content 0.52
exon number 17
gene id ppp1r13b
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60532742 ~ 60599366 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGTTTGATGCCCGCGGGATGAAGAAGTTTGTAACCATTGTCCTTCGTGGCCTGGTCAGCCTGTCTAAGGAAAAGCCCTGGGGGAAAGAGCATGTTCAACATCTGAGGAGAGAGGGCAGGAGAGGACGGACTGCATCCAAGTGGAGTAAGATGATTCTGACGGTGTATCTGAGTGATGGTGAGCAAGCTCTGACAGAGGTGCCCATCACTCCAGAGACGACGTGTCGTGATGTGGTGGAGTTCTGCAAGGAACCAGGGGAGAGCGGCTGCCATCTGGCTGAAGTGTGGCGTGGCAATGAAAGAGCAATCCCCTTTGACCACATGATGTTTGAACACCTGCAGAAATGGGGCTCCAGGAAGCAAGAGGTCAAGTTCTTCTTGCGTCATGAAGACTCGCCAACGGAGAGCAGTGACCAAGGGAGCCAACAGTCTCAGGAGCAAGCTAACAGAAGAACTGGAAGCAGCTCAGATAAACACGTGGAGAATGGGGTGGGGAACCCTCGCGTGGAGCTCACTCTCTCAGAGTTGCAGGAGATGGCCACGcgacaacagcagcagatcgaGGCCCAGCAACAGATGCTCGTCGCTAAGgaaCAGCGTTTGCGATACCTTAAGCAGCAGGAACGGCGGCAGCAGCAGGCTGTGTCTgagactgagaaactgcagaggCTAAAGGACAGAGTGGAGAGCCAGGAAGCAAAACTCAAAAAGATCCGAGCCATGAGGGGCCAAGTGGACTACAGCAAAGTTATCAACGGCAACCTGTCTGCAGAGATCGAGCACATCAGCGGGCTGTTCCAGGAGAAGCAGGCTGAGCTGCAGGCGGCCGTGCTGAGGGTGGATCAGCTCAGCCAGCAGCTGGACGACCTAAGAAGGGGCAAGCTCAATGGCCTGCAGACCCTGGGGGGCCATGTCACCGGCACTGCTGCCCTGGAGCTTCGCAAACTCTACCAGGAACTGCAGaTCCGTAACAAGCTGAACCAGGAGCAGAACAGtaagctgcagcagcagaaggAGCTGCTGAACAAGCGCAACATGGAGGTGACGCTGATGGACAAACGCATCAGTGAGCTCCGGGAACGCCTCTATAAGAAAAAAGCTGAGTTAAATCGAGCAAATGGCCCTCCTTCCCCTCAACCCGCTCCAGGCAGTACAGGCCGAGTGGCAGCAGTCGGACCCTACATCCAGGTGCCTGTGCCAACACGCCCAGAAAGTGGCTACATGGTTCCCCCAGACCCCCTCAAACCTCAGACACTGGGCGTGAACACACCAGCTAACAATGCTCAATCCAAATCAGCTAATGAATCTGGGTGGCCCACCCTCAGCAAAGGCAATGCATCACTCAAGCCGCCAGACTGGAAGGAGTCAGTGGGAGACCCCTCAAGCAAAACCGTTTCTCCGGCTGGCACCCCAGCTGATAAGATTCCAGACCTAAACAAACTGGGCTCTGCTCCTCCTCCTTGTAAGCCCCAGCCTCCTCCATATGGAGCCCACACCAGTTCTCATCCCCTCTCCTCCGCTAACTCTGGCTCTACCAGCTCATTGGACCGCCGCAAGGATGTCCCCTTACGGCCTGTGCCAGGCCATCCGACCAACCCCCCAGGTACCAACCCACCGCCTCCTCCAGCCTGGCCCCGCGTAGGTTCCTCCACCGGTTCTTCCTcacagcagatccagcagagaATCTCAGTCCCACCCAGCCCTACCTTCCAGCCCAGCTCGCCCCTTTTTCCACCAGGAGAAAGACCTGACCCTCCTCTGGCTGTGGCTGTGCGTCCATTTATCCCAGACAAGGGCTCTAGACCACAGTCGCCCAGGAAAGGCCCAGCCACCATGAACTCCAGCTCCATTTATCACATGTACCTTCAGGGGGTGCCCAAGAACTATCCATTTGGAAACAAGCCTGCTGTAAAAGCTGGTAAAATGATGTATGGAAAACCAGTCCTCCACTCCAGCTCCACTCCTCCCTCTCCCTTGCCCTTCTCAGGCTCTGGGGCTTTCCCGGGGCTGATTGGTGCTGTAGGGGACATGGCAGACGGTGACCTGGATCTTGAGGGCCAGATGGTAGGTCTCCCAGAGGTGCCTCCTCCCATGGTGGACCACATCCCCCGGCCGCTCAGCCCGACCAAACTCACCCCCATGGTCCACTCGCCCATGCGCTACCAAAGCGATGCAGAGCTGGAGGCACTACGCAAGAAGCTGGCCAACGCTCCAAGACCACTCAAAAAGCGCAGCTCCATCACAGAGCCTGAGGGTCCGAGCGGGCCCAACATCCAGAAGCTCCTCTATCAGCGCTTCAACACCCTGGCTGGTGGAATTGAGGGAGGAGTTGTAGGAGTCGCAGGAAGTGGAGGAGCGACTCCGTTCTACCAGCCAGCAGGAGCTGCAGGTGAGGCGCCGTCTGACGCAGACAATGGAAACCCACCCTCAGAATCACCAGTCACACCTCTCACCGGGACTGAGGGGACGCCCCCTGACGCCCTACCTCAGATTGATGCAAACGATAACCAACCCATCCAGCCAGAACCTGAAACACTACTCCCACCAGCACTGGAGCCATCAGAGGACGATGACAACAACAACCCTGCAGAGTCCTCTGCTACCCTGCCCAGCCCTGTGCCTGAGGCCAGCTCACCACAAGAGGCAGCAACCTCACCATCATCTCAGCCTACAGAAAAGCGCACTAACCTTAAGAAGCCTGACTCTGAGAGGACGGGCCACGGCTACAGAGTAAAGTTCAACCCCCTGGCTCTGCTCCTGGACGCCTCACTGGAGGGAGAGTTTGACCTGGTGCAGAGGATCATTTACGAGGTGGACAACCCGAGCACTCCCAATGATGAGGGCATCACACCCCTACACAATGCCGTGTGTGCTGGACACCACCACATTGTCAAGTTCCTGCTTGATTTTGGAGTTAATGTTAATGCAGCAGATAGTGATGGCTGGACCCCCTTGCACTGCGCTGCCTCCTGCAACAGTGTCCATCTTTGCAAGATGCTGGTAGAATCTGGAGCTGCCATCTTTGCCACCACTATCAGTGATGTGGAGACAGCAGCGGACAAGTGCGAGGAGATGGAGGAGGGATACATCCAGTGTTCACAGTTCCTCTATGGCGTGCAGGAGAAGCTGGGTGTGATGAATAAGGGAGTTGTATACGCTCTGTGGGAGTATGAGGGGCAGAGTGCCGACGAACTTTCCTTCCAGGAGGGAGACGCCATTACCATCCTCCGCAGGAAAGATGACAATGAGACAGAGTGGTGGTGGGCAAGACTTAATGACAATGAGGGCTATGTGCCTCGCAACCTGCTTGGGCTGTACCCCAGAATAAAGCCACGTCAGAGGTCCCTGGCATAACCAGCtgcttctctccagtgtgacTGACTGGACTGCTGTCTGGAGGAGTTGGACCTCCACCATTCGCCCCCTTCTTTCCTCTCCTGCTGCTGGGGCGAAGCTGCTAAACCATGTTCCCTGATGGGGGCAAAAtcaacaacactacacacacatacatacatacacactcactcactctcatagatacataaatacatacatacaccatAATAAAGGCCAAACAAGAAGCCTCAGGTCCTAAAATCTGCCCACTACCCTCATCACCTGGCCTCAttccctcctctcctctcctctccttaaGACTCGGATTCGACCGAGCGTCATTCAACATGTATCATAGCCACTGCACATTCCTTTATGGAGATCAAAGCACTACCTACTTGGTTTTATagcttttgttttatattgttgttTCCGCTTGCATTTTTATCTGGAGATTTTTAGCTCATTATAGTTTATTAGGGTGATGCTGGAAACATGCAGGCTGGATCAGCCCAAGCGCAGCTGCTTTCGCTTCCTTTTTCTGAACCTTGGTTCAGAGAGGGAATTTTAATGCTGTGGTTAAGTAAGCATTTGTACTAAAAGTCATGCTTATTACTTTAAAAGCTAAGAGGGGAAAACTGGATTAACATTTAGAAGGCATTTTCTTGGTGTATGAAAAGTTGAGGAATGAATGTGAAATATGAGGTGATCTAATGTGTGCACGAACAAAGAGCGTTATATTAGGTGAAAACAAATATATgagtatatgtatatagtaATTGGAACAAGTTATTATAACTAAGAAAGGGGTTCATATTATGTTCATTTAAGCAAGGAGATTAAAATGCACAGTGTTATCTGTGTGACTGGCCTGTACTCTTTATAGAGAGTGGAGTGTGAAAAGCGTGCATGAATGAGAGATTTTTATGATATGCAGTATAAGAAATTTTAAGgactgtgtgtgcgtgtgggtAATGTGAGAATGACCGTGTGAGAGTGAAGAGTGCAAGAAGCCAAGCTTGTGTTTCAGTAccattaatagtaataaaactGGCAGTGCGAGGTCGAAGTGAACAAAACATGCTGTGACGATAAAACAAGGCCATGCTTAACACACTACGTTGGTTTGCAGCCTTGGAAACATGGCTTGAAAGCTTTTCTACACTACGAAAACAGAAGGCATGGTTTAAAtgcatatttactttattttacactacatatttttcttttgttttttttaaacatcgcATTACATTCCCTGTTCCATTCCCCTCCCGGTCTTGCTCAAGAAACTTGTGAGCTGGTCTTTGTGCCCTGCCTATGAGGCAGTAATGAGCTTTACCATGGAGTACACCTGTAAATACTGTGAGGAGGCTCAGAGAGTGAGCTGTGTTGGAGTCTGCGCTGAAGGACTTACCTGCTTGTGCAGATCTCTGTATGGCGTTCAGATACGAAAACCCTGCCTCCTGTTCTTAACAtgtgcacaaataaaaataaacaagttcTGGGAAGACAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0045786 negative regulation of cell cycle biological_process
GO:0008134 transcription factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39856 lncRNA upstream 20911 60520342 ~ 60525051 (+) True c3h14orf2
TU39800 lncRNA upstream 26095 60463977 ~ 60519867 (+) True G29691
TU39785 lncRNA upstream 163706 60382041 ~ 60382256 (+) True G29679
TU39765 lncRNA upstream 189080 60356477 ~ 60356882 (+) True G29663
TU39764 lncRNA upstream 192832 60351318 ~ 60353130 (+) True G29662
TU39919 lncRNA downstream 90635 60690001 ~ 60690253 (+) True G29772
TU39923 lncRNA downstream 100979 60700345 ~ 60702123 (+) True G29775
TU39965 lncRNA downstream 228371 60827737 ~ 60827940 (+) True G29812
TU39978 lncRNA downstream 329756 60929122 ~ 60930577 (+) True G29825
TU40091 lncRNA downstream 707853 61307219 ~ 61309843 (+) True G29916
XM_022663952.1 mRNA upstream 23670 60520350 ~ 60522292 (+) False c3h14orf2
XM_007230914.2 mRNA upstream 54997 60485903 ~ 60490965 (+) True rd3l
XM_007256671.3 mRNA upstream 83914 60395578 ~ 60462048 (+) True LOC103036511
XM_022663992.1 mRNA downstream 103716 60703082 ~ 60793830 (+) True brf1
XM_022663998.1 mRNA downstream 103716 60703082 ~ 60793830 (+) False brf1
XM_022664028.1 mRNA downstream 395561 60994927 ~ 61163598 (+) True LOC103031412
XM_007238742.3 mRNA downstream 1094589 61693955 ~ 61704828 (+) False l3hypdh
XM_022664062.1 mRNA downstream 1094702 61694068 ~ 61704828 (+) True l3hypdh
XR_002649037.1 other upstream 102455 60430861 ~ 60443507 (+) True LOC111190190
TU39573 other upstream 947721 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 986210 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 1317263 59228068 ~ 59228699 (+) False LOC111194375
trnad-guc other downstream 1093847 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 1097434 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 1326740 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 2239869 62839235 ~ 62843043 (+) False LOC103045797
TU40713 other downstream 2736368 63335734 ~ 63345693 (+) True G30362

Expression Profile