RNA id: XM_007232817.3


Basic Information

Item Value
RNA id XM_007232817.3
length 6543
RNA type mRNA
GC content 0.46
exon number 39
gene id plcb4
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45802754 ~ 45926101 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgggCGCGCGCGCCGGCCCGGGGCCTTTCCGCGTGCGCACCACTGGAGGGCGAGGCGCGCGAGAGAGAAGCGGGGAGGAGAGCAGAgggggcagcagcagcagctggaaaacaagcgagagaaaaagaggaaaatccCGGTATCTCCCTCCACCccccctaaacacacacagactgaccGACCGGAGGATCAACAGTACAACTACAGTACACAACAACGACGACGGCGCGGAACAGCTAGCGGCGGGGACTCTGCTGATCGGACGCCCTGCAGTTCtagtggaggaggagaagaggagaggaggaggaggagaaggaggagaaggaggggtgtgtgtgtgtgtcgcgcTTCACCACTCGGGAGGTCCgaagactgaaagagagagagagagggaaagagggaggaCAGAGAGAGCAAATCGGCAGCGCGGACAGCGACTCGGACAAAGCGGCGGGAAATCTCCACCACCATccccatcatcatcctcatctacAACAGCAGAGGAGAGGAGATGCTGTGCTCCCACTGAGACACTCAATGCAGCACTGaACCTCACCCATTGCTGACCTCAGCTGTCTAGCCGTCCCGGACTCAACTCTAACATCTGTCTGGTCTGCGAGCAGCCATGACAAAGTCGTATGAATTCAACTGGCAGAAGCATGTTCCTGACTTCCTGCAGGAAGGTGCAGTCTTTGACAGGCTCGATGAGGATCCATTTGTCTTTGAATCCAGTTGCCTTTTCAAAGTCGACGAGTTTGGCTTCTTTCTCACATGGAAAAGTGAAggaaagGAGGGTCAAGTCCTCGAATGTTCCCTGATAAACAGTGTCCGTGTTGGAGCAGTGCCAAAGGACCCAAAGATCCTGTCGTCTCTGGAGGCGGCGGGGAAGAACGAGGCGGATCTGGAGGGCTGCATCATCTGCGTGTGCAGCGGCCCTGACCTGGTCAACCTCAGCTTCATGTACATGGTGGCCGACAATGCCGACACTGCCAAGAAATGGCTGGAGGGCTTGAAATCAGTCATTCACAACTTCAAGGCGAACAACGTGTGTCCGATGACCTGCCTGAAGAAGCActggaTGAGGCTCTCCTTTCTGACCAATGTCAATGGAAAAATCCCAGTCAGAGGCATCACAAGGACTTTTGGCTCAGGCAAAACGGAGAAGGGGATATTTCAGGCCCTGAAAGAGCTCGGCCTGCCCAGCGGGAAGAATGATGAAATCGATCATTCCATGTTTACCTTCGATGTCTTCTACGCTCTCACTCAGAAAATCTGCCCACGCACGGATATTGAGGAACTCTTCAAAAAGATCAATGGGGACAAAACTGATTATTTAACAGTAGACCAGTTAGTCAGCTTTCTGAATGAAaatCAGCGGGATCCCCGGCTGAATGAGATCCTTTTTCCTTTCTACGACCCCAAACGAGTCATGCAGATCATCGAGAAGTACGAGAGAGATGAGGACCTGAAGAAAAAAGGCCGCATGTCGAGTGACGGTTTCTGCCGGTACCTGATGTCAGATGAGAATGCACCTGTGTTTCTGGATCGTCTGGACATGTGCCAGGATATGGATCAACCCCTAGCTCACTACTTCATCAGCTCATCACACAACACGTACCTGACCGGCAGACAGTTTGGGGGGAAATCTTCTGTGGAAATGTATCGACAGGTGCTGCTGTCTGGATGCAGGTGTGTGGAGCTGGACTGTTGGGATGGAAAGGGAGAGGACCAGGAGCCCATTATTACCCATGGGAAGGCCATGTGCACAGACATCCTCTTCAAAGATGTAATTCAAGCTATTAAAGAGACAGCTTTCGTTACGTCAGAATATCCTGTTATTCTCTCATTTGAAAACCACTGCAGTAAACCTCAGCAGTATAAGATGGCTAAGTATTGTGAGGACATTTTCGGAGAGCTGTTACTGAAACAGCCACTGGAGGGCTTCCCAGTACGTGATCTTCTGACTCTGCCTTCACACACTGTATTTTTCCAAGACCTGatTGAGCCTGCTCGCCCCCTGCCTTCTCCAAATGACCTGAAAAGGAAAATCCTCATAAAAAACAAACGTTTAAAACCTGAGGTTGAGCAGAagcAACTGGAGTCATTTAAGAGACACATGGAGGCGGGAGAGATGAGTGTACAGGGAGGAGATGATGAGAATGAAGAAGACATGGAGAACGCTGACAGCAAGGAGGTCAACTCAGATATGAAAACCCGCAACACGTCAGAAGAGCCCAGTGAACAAGACACACAAGAAAACAGCGTCAAGAAAGACAAGATTCCTGATGATGAAATCACAGAGATTTCTGAGGCTACAGAAGCAGACGTGACTGATTTGTCAGAGGCTTCGGATCTTGATAACAAAAAGAAGGGTGGGGATGCACCTGAGGATGCAGATGCTGAGCAACAACTTATTGCCTCATATAAGTATGAAGGAGCCACAACCAACATCCACCCTTACCTCTCTGCCATGGTCAACTACGCCCAGCCAGTCAAGTTCCAGAGCTTTGAAATAGCAGAAGAGAAAAATATCCATCACAACATGTCCTCCTTCAATGAGTCTGTTGGCTTAGGCTACCTGAAAACCAACGCTATTGAGTTTGTAAACTACAACAAGCGGCAGATGAGCCGGATCTACCCCAAAGGAGGCCGCGTGGACTCCAGTAATTACATGCCTCAGATCTTCTGGAACGCTGGCTGCCAGATGGTGTCTCTGAACTTCCAGACCCCAGACTTGGCCATGCAGCTGAACCAGGGGAAGTTTGAGTATAACGGCGCGTGTGGGTACCTGCAGAAGCCAGACTTCATGCGACGCTCAGACAGGATGTTTGACCCGTTCTCTGAGACGCCGGTGGACGGGGTCATTGCTGCTACCTGCAGTGTTCAGGTATTCTCAGGTCAGTTTTTATCAGATAAGAAGATTGGCACGTACGTGGAGGTGGATATGTATGGCCTTCCCACCGACACCATCCGCAAAGAGTTCCGCACCCGCATGGTGATGAACAACGGACTGAACCCTGCCTACAACGAGGAGCCGTTCGTCTTTAGAAAGGTCATCCTCCCGGATCTGGCCGTATTGAGGATTGCTGTGTATGATGACAATAATAAGCTGATTGGTCAGAGGATCCTGCCACTGGACGGCCTGCAGGCCGGCTACAGACACATCTCTCTGAGGAACGAGGGAAACAAACCCCTGTCTCTCCCTACTGTCTTCTGCAACATCGTCCTCAAGACCTACGTTCCTGACGGATTCGGAGCCATCGTGGATGCTCTTTCTGACCCAAAGAAGTTCCTGTCCATAGCTGAGAAGAGAGCAGACCAAATGAGAGCACTTGGTATAGAAACGAGCGACATAGCAGATGTGCCAAACGAAAGCTCCAAGAATGATAAGAAGGGCAAGGTGAATCAGGTAAAGGCTAATGTGACTCCTCAGACCAGCTCAGACATGGGCCAGACCTCTACTGCCACTCAGAACAACAGCAGCGAAACCAAGAAAGATTCTGCCCTGGTTAACCAGGTGACCATTGAGGACTTAAAACAGATGAAGTCGTATGTGAAACTGATCAAGAAGCAGCAGAAAGAGCTGAATGCATTGAAGAAAAGACATGCAAAGGACCACAATGCCATGCAGAAATCTCATTGCACCCAAGTGGACAAGATGGTGGCTCAACATGACAAAGAGAAATTTACACTGGAGAAGCTTCTGGAGAAAGCAATCAAGAAGAGGGGAGAAAACAACTGTTCAGAGTTAAAGAAGGAGACTGCAATAAAAGTAGAGAACCTCACAACAGACCACAAAGCAAAGGTGAAGGATATTGTAGCGCAGCACACGAAGGAGTGGTCCGAGATGATTAACTCTCACAGCACAGAAGAGCAGGAGATGAAGGATGCCCATGTGACACAGCAGTGTGAGCATCTCAAGAAACTGCTGTCCAGCGTCCAGGAGCAGCAAACCATGCAGCTGAAACTCGTCCATGAGCGACAAAGCAAAGAAATGAAGGCTAACCAGGCCAAGACGTCCATGGAGAACAGCAAGGCCATCAGCCAGGACAAGAGCATCAAAAACAAGGCCGAAAGAGAGAGgAGGGTGCGGGAGTTGAACAGCAGTAACACAAAAAAGTTCCTAGAGGAGCGAAAAaggTTGGCTATGAAGCACTCAAAAGAGCTGGAGCAGTTACAGAAATCCCAGCGCGAGCAGTTGGAAAAACTGGAGAAATTCAATGAGCAGGCCAAGGACATGCAGCAGATGCTGAAGCTGGAGGCGGAGATGGACCGCAGACCAGCAACAGTAGTGTAACAACTCCATCTTCAAACTAAGAAAcgaagagcaaaagagagagagaaagagagagagactccttTCTGTAAGCCACCACTCCCACCTCCCCACCCAGAAACCCTCAGACGGCCCTCCTGCTCCTAACCACCACTCCCTTACCACTCTGAACCACCACGCCAACCCTTCTGTATTCCAACAACAACTAATCTCAGACATCGGCCTCTGCAGTCTGCAGCCCCTCACTACTGAGATACAGAGCGGTCGTCTACAAAAGTGTGTCTTCTTAAAGCAGCCAGGCACTCGGTGGGACGGACATAACCCACCGCCGCTGCCACCTTTATTCTAATTCATGCCTTCAAACGTACCGCCGCCCACACTGATCATCAGATCAGCCCCTCTTCAGTCTCCCTGTCGTGGTGGCGCGAGATGAACGGAACCTGAAGTGTTCTTTGTAAACCTTTTAACTTCTGTCTCAATGGTACTAGTTCATAGTAGCAGCACCAGGCAAATAGAGGTACTCCTGAAAAAGAAATATTAGTTTGTTTTATGTGAGCACAACGTTGTTGATGAGGCGCTACACAAGAAGTCGAGTAAAATATCCTGAGCACTTTATACGTGGTAGGCCGTCAAAGGATTATTTTGGAATCTGTAGCAGTGCACTTGGTTTCCCCTGTGGTAAGAATGTACAGTCGAATGTCTGAACACTGTATTTTAGGTGGCAAAGGTCAGGTGTGAATGAAACCAAACGTAGTAGTCAGTATAGTTCttacactgttgttttttttttgtttttttgtttgtttgttgttgttttgttttaaaaatgcatttcttttttatttggctttttttttcagatataaaaaatgAACTGTTTTACCCAAATCTGTGATTTTAATTCCTCAataagcttttgttttttgtttccttcagtaatgtatttttttatttaaatgccaCTATGATTTCTTTGCATATATTTACagacactgtactgtacttgcTGTTACACTGTTTAAACGTTACAACAGCTATGGTGTTGAAGACATTCCATGATGATAGACCCGAAAACAGATACCCCTGAGACGAAAGCGTGAGAAGAAGTCTGCTAGGTTACGATGCCGGTGGAAATTATAGTAGGCCTTTTATCATCATTTATTATCCATTGGCTTCTTATTTTCAACAATCAAAAGATTCACTTTTTTCAAGGGATTTGAAGAAACAATCACTGAAATGAGCTGAGTGCAATGAAGATTGAGGGGGTTAAAGAAACACAGGAATAGGTGCTTTAGTCTCACTCTCACATTAGTGCTCGAGGttcattgtatttttctttgtattttttgctcGAAGAACGAGGCAGTCAAACAGGCAGCTCCTCCTGTGGGTCTTAAAACAGACAACACACCTTCATTCACAGAACCATAAGAACCATAAGTTTGAGAACATTAAAGAACCACTTTGTTTTCCTCTCACCAAATGATGTCTCCTGTTGAAATCTACTAGAAACTGAGAAGAAGagagtatattgtatatactggAATGTATGTAGTTCATTTAACCAAAAGGTTGAACCGTATGCTTATTCTAAGGGCTCTGGGATAGTGTGTACATGTTTGTAATGGGAAAGCCACCTATCAAccactaatttattttatttcctccttgtttcttttatttttctttctttccttttcaatCCTTACCATCAGGAACTGGTACCTGTATTATGCTTTCACCACATATCTACTACAGAATAATAAGCAAAGTGCTTTTAAACTTTAATGCCACTCGATGTCTGGTAGGacgtttaaattattttacaaacGAAAAATGCCAAAATAAgggtttatttatatacagatatatataaatatataaatatataaatataaaaaaatatattattaaatatggtGTGTAGTTTAAGACTATATTTCGTTAGTTAGAGGCTTTTTGCACTAGTTGAATGTTGCGCGACTTTCATGTAGATTTTTTGCTATATAGTTTGCAGAAAAAGCAGATTATTTTTGCAGAACAATTGTATGCTTTGAATTTCAtccatttatattgtttttcgtttgtttgttttttcggAGCTATCTGCAGCTAGTCAGTGGACCATTCTGtgagtgtttttgtatttatattgtatttgtcAAACTTCTAGCAaggaaaaatactaaaaatactgtTGTTATCCTGCTACTTTAATACCGTTTTATAGTATGTGTACCAATAAACTATCCAGGTGTTAAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35473 lncRNA upstream 263817 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA upstream 274171 45524488 ~ 45528585 (+) True G26402
TU35391 lncRNA upstream 689788 45111185 ~ 45112968 (+) True G26322
TU35350 lncRNA upstream 937072 44865143 ~ 44865684 (+) True G26286
TU35342 lncRNA upstream 948246 44853881 ~ 44854510 (+) True G26280
TU35583 lncRNA downstream 140787 46066888 ~ 46067187 (+) True G26476
TU35587 lncRNA downstream 154204 46080305 ~ 46083403 (+) True G26477
TU35643 lncRNA downstream 429784 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 437783 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 483232 46409333 ~ 46409990 (+) True G26529
XM_022686757.1 mRNA upstream 17302 45615564 ~ 45785454 (+) True LOC103021983
XM_022686761.1 mRNA upstream 17302 45615564 ~ 45785454 (+) False LOC103021983
XM_022686767.1 mRNA upstream 17302 45615564 ~ 45785454 (+) False LOC103021983
XM_022686771.1 mRNA upstream 17302 45615564 ~ 45785454 (+) False LOC103021983
XM_022686776.1 mRNA upstream 36802 45615563 ~ 45765954 (+) False LOC103021983
XM_022686811.1 mRNA downstream 8373 45934474 ~ 45945832 (+) True lamp5
XM_007232827.3 mRNA downstream 143472 46069573 ~ 46076984 (+) True LOC103025099
XM_022668060.1 mRNA downstream 206472 46132573 ~ 46134116 (+) True LOC103030371
XM_007232836.2 mRNA downstream 234550 46160651 ~ 46178257 (+) True LOC103027027
XM_015601183.2 mRNA downstream 266928 46193029 ~ 46201498 (+) True LOC103027954
TU34777 other upstream 2308441 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2377850 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2380710 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2439312 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3286199 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 602294 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 2352166 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 2354664 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2629696 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2629696 48555797 ~ 48641905 (+) False G26995

Expression Profile