RNA id: XM_022686896.1


Basic Information

Item Value
RNA id XM_022686896.1
length 8565
RNA type mRNA
GC content 0.44
exon number 26
gene id LOC103025714
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46108572 ~ 46129242 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atGAAGGAGCACGCTGCAGCTcgacgggagagagagagcggagtGAGCGCGCGGCGGAGAGAGTTTAGCGGTGCAGTTTTAACCTGGTTCTCCTGCTGATCGATTAAAGGATGCCAATAAGACAAGAATTACATCTTACCAGCTGATTCCTTCCACTGCTCTCACAATTATGGAAGTTGATGTTAATGCGGAGAGGCTGACTGGAATGTCCTGTTCAATATCTACTCCAACCTCAGTTTCTGACTTACTGATGCAAGGCCAAATGGATGATTGTAGCAACAACAAGACTGTTTCTGGGAGCAAGCAGGCAAGCCAACCTGTTGTCTTACCTTTGGTAACATACTCCAAAAGTCCTACACAGAACGGTTGCACAGACAGTAATATTACTGCTGTCCTGGAAAATGAAACAGTTTGGAGTCGGTTTCACAACTTGGGTACAGAGATGATCCTTACAAAACAAGGCAGACGGATGTTTCCCTGCTGCCGCTTTAGACTGAGTGGATTAGATCTGGACAGGAAATACATGCTGGTTATGGATTTTACACCTTTAGATGACTTAACCCACAAATGGAATGGAAGTACATGGGAGCCTGCTGCAGTGGCTGAGCCACATTTACCTAGCCAGGTGTGTGTTCACCCAGAGTCTCCAGCCATTGGTCAGCAGTGGATGGAGGGTCCAGTGTCCTTTTATAAGGTGAAGCTAGCCAGCAACCCCATAGACGAAGAGGGTAGTGTGTTTCTACAGCCGATGCAGCGTTACCAACCGAGACTTCATGTTGTTCCAGTAGATTCTGATTCACAAGAGGTTTTTGACCTTGACAGCCCAAAGGTTCAGATGTTTACCTTTCCTAAAACAGAATTCTATGCAGTCACAAGCTACCAGAACCCACAGATTACTCAACTTAAAATTGACTGTAATCCTTTTGCCATGGCTTTCCGTAAAGACAGCCAGAGTCTTCGTCTGCTTCAGGACAAACTTGGAATGTGTCCTCCTGGTAGCACTCCTACACAGCTTTCTGACCAGAATTTGACCAGCTTTAACAGAGATcgaaacagaaaacaaagcacATTAAAGGAAGCTCTCTCACCCTGGATTAAAGAACACAGTGAATCATCATATCCTGAAGATGGACCGGGCATTTTAGCTAATCTGAAACCTGCAGCTCTGAGTCATCTGAATGGTGCTGTTTTGAGCAAAAAGGCAGTGGATTCCGGTGAAAATGACGAGCCATCCTTGACAACCCCTGCACTAGATGAGCAAGTCACACTTTCAACTGTTCAACACAGTGTCAAAACATCCATTCAAGAACCTCCACAAGCTATTAATGGAACTGTTTCTCCTATGAGCACTACTGAAAGCGCAAAACTTCTCTGTGAAGATGCTGTTCATTCCCAAATTAGCAATCTGTTACACACGGAACCGGTCACAAATGCTCCTGTTTTTCTGTCTCAGGGAAGAATGAAGCTGAAGTCTGCTGTTGCTTCATTTGTCAAAACACCTTTCCGGCATAACATCCCTCTGCATTTGAGACGTAGGCCTAAAGCTAGGAAACCCAAAAATAAGTGGTGGACTAATGTAAGGTATTCAAGACGCAATCCTGTATGTGCTACTCCTCAGCGTGCTACTCCTAATGTTACTTTGCAACCAGACCTTGAAGATGTGGAGGGGATGCTGTTTGTGTCTTTCACTGCAAAGGAGGCCTTGGATATTCATGTTGAAAACATGGAGCATATAGAAACATGTACGTCTCCACTGCCTGAAACTCCGAAGCATTCAGATACTTCTCAAATTGAAGAAGAAGTTATGATTTCTGTGGAGGAGAGGATTTCTCAGTTGGAGAGTACTTTACTGATTCATCTGAAACAGCAGAAACACAGACAGGTCATTCATCCACACCTGCAGGAAGttggCATGAAGTTGAGCCTTTTGGATCCAAAAATATCAATAGACTTGCAGTACCTTGGTGTGCGCTTGCCTTTTCCCAGCAATAGTTACATTGAAATAAATTCTTCAGCCACTTTCCTTGATGGAGGTGGCTCTTTTGTGTCTCGGACTGGAAAAACAAATGATCCCACAAAGATTAAAGGCTGGAGAGAGAAGTTTAACAAGAAGACAGTGCAAGGTACTTCTGAAGGTATGAGGAACAATTCTGCATTCTGCAGTGACATGTTGGACGAGTATCTTGAAAACGAGGCGCAGCAGATCAGTGATCGTGCTGCGGTCCTTTCTCAGGGCTCTTCAACTCCAGTTTCCTACCAGTTGCCTTCCAAGGGCAGCAGTTATGTGGTCACTTTGAATAGTCTACTCAAGTCTCGATCTACATCGTTAAACAAGGTTCAATACAGCCGTGTAAACAACAGCCAGAATAAACCTGTTGTTTGGAGGGCTCCAAAAAAATGGTCATCTTTCTATTCAAAAGGACCACAACAAACTACCTTTGAAAACAAGAGAAGTAATTTTGCACATTCATCTCAAATTGATCAAGCCCGCAGTTTTCCTGACCCACCCAGTAAACTTGGAACAAAGAACCAGGCTATCAATCCTAATCTGAGATGGAGCTATAGTTCGACACATGCAAAAACGCAAACGCAGAGCGTACTTCAGGACATGGAGGAAGAGGCACTTTCTTTAGGGAAAGTCCGTACACACATCACCACAGAGAGAGCCAGCTTTGCTCTCAATTCACTGCTCACATTTCAGAAATCAGGAGTAAGGCCTAAATACTACATTCGCCATCATGAAACTGAATGTCCTGAAGAATTCTGTCGGCTGGGCTGCATCTGTGATAGTTTACACAGGGAGATTCGAGGGCCCACCCACTGCAGGCGTGTTCAGTGCATGTTTGACTGCCATTGCTTCAAGCACAAAGTTCTTCTGATTCGCCCTCCAAAAGTAACAACCTTACATCAGGGCAGGAAAAGAGCTCTGATGGCTTTTCCCATTGCAGATCCAGAGAGGGGAGACAGACCACCACCTGCTACAAGCATTACTACCTTATGGAACAAGAGCACACCAGAACATGACCCGGAGCCTTTATTTGTTCCAAACCCAGCACTTTCTTTTAGAGCAGCTCCTGGAATGCGCAATTATGTCCCGCGTCTCATTCCTCAGttgcgGGAAGAGGACAAAGATCCTGTGtacctttattttgaaagcagGATGACATGTGCTCGTGTGAGAGAGTACAACAGTAATCCCCCACCTCAGGTACACATGTTACCTGGCAAACGTACAAGAGAGAAGCAAACAGACAAAGTTaATGATTGTTTTGAAGCTGGTGTTGCACCCACTTCTCAAAACAGATCAGataTAAGTGCCACAGAGACTGTAGAACTCCGGGAAGCTGCACCCACTGCAGTGGGACCAGATGAGCCAGTTCCCACTAAACTACTGGAAATTCTCTCAGAGTGTAACTGGGAGCCCCATCGGAACTTGGTGCTGAGTGGATTGTTTGGGCGCATGAGTAATAACCTCCTCTCAGAGCCTTTTTGCCTTGGCACATACAAAATACAGCTTCTTTCTACCACACTGGAAAAAGGAGATAATCCTACAATCACATATAAGGTGTGTGTTTCCCGGGCTCCGGAAATGAACGTGACCAGTGATGTACAACCCGCGATGAAAAAAAGAACGAAATCCAACGTTTCAAAAGCCAGggagaaacaaacacaaaccaaaacAGGAACTACAGTCTCTGCACCAGTGGCGTCTGAGAAAAAGAGCAGCTTATTGATTGACAATCAGGCAAGGGTGCCAACTTTTAAGAAACCATCAAGGATTTTCCCCctgctctctcactcacttcctGCTGGGTGTCTCAAGGCAGCGAAAAAGAAAGCAGAAGGTTCTGCTTTAGGGCTAATTAAGGTCAATGGCAAAACATACAATCAAGCAAAACTGTCACTGGGTCAGATGGGAGCACTGCACCCAGCCAATCGCGTTGCAGCATATGTTACTGGTAGGCTACAGGCCAGCAGAAATCAGTGGAAGGTCAAAGCTGATGCACCAAAGCCGCATGTTAACCAGGCTCCTGTTGTTCTACGCAAAGTAACGTGCACTGCAAAGCCAATTCCATCAGCACCTCAACAATCTCTTCCAGCCGGTACCAGTGAGCTAAACACAACAGTGCTTACAAGGACAAGAAAATCAAAGGTCACTCCCTTGGATGCCCTTTCAAAGCTTGTTGtgGACAGCACCTCTCTGCAGGAAGATGCATCTGTAATATCACCAGCTGCTACAACTCTTGTGGTGTCTGCGAGCCCAACATTTGTTCATCCCACTGTTCCACCTTCCAGTGCTGCCAGTACATCTTCCACAAAAGCTGCCATGCCTACTCTCCCATCTGGGCAGCAGGTGGTCCTACAGCATTTACCAGGAGTGCCAGGGTCAAACTTTCTTTGTCAGTATAATGGCCAGTTACTTCAACTAGTGTCTGTTGCCCAAGGGTCTGTTGGTCAGCCACAAGCCAGTTCAATGGAAGGCGGTGGATCACAGTTAACAAGTCTGCCTAAAGACACCAATTCTCTACAGAAGCCATTGGGCTCTACTTTGGCAAAACCATCGCTCATGTCATTTCCAGTCATTGCACCTAAAATCATTTCCCTTTCCGGAAGTAGTGGCATGAATATTGCCAGTGGAACCCCAGCAATTAATTTACAGTCTAGATTCCCTGGTAAAGCAGGGACATTCTCTTTTCGCATATGCCCACCTAGTACGGAGAGCAAGCCTGCAGGATCACAGCAGGGTCCTAAACTTCCTGATCCACATGTTACTGCTCCTTCAGCTTTGATACTCCCTGGAGGTTTCACTCTGATAAAACTCCCTCTACAGTCCCACCCTGGTGTACCAGCTGTTTCTGCAGATGCTTCTTCCTCTGTGTCTGGTTCTGCTGAATTGCCCCAGAAAGATCAGTGTGGAGAAAAGGTTGCGGCACAGAGTTGTTCTCTCAGCACTGAACAAACATGTCAGGTCTCAGAAAGCAGTTCCAAACCATCTGTTGCAGAAACATGGAACAATGACTCAACCCAGACAGATGCGACTGGCTTAGGCCAAGGAAACAGTGTCCTGCCTTCAGAAAGTGTTAAAGAAGACAAGATTGTACATAAAACCTTGGATTCAGTGAATGTTAGCGATAAAACTGAGTGTGGCAACTGTGACGTGGTACCTGAAGCATCAGGGATGATGTCCAAAAGTGAGCATGATAAGGAGAAACAGGCAGGGCAGGCAACAGCAAGCAGCTCTGTTTCATCCATTGCAATAGTGACATCGAACAAAGACTCAACACAGGCAGATGCAGGTGATTTAAGCAACGACAACCGTGCTCTGACCTCAACTGTTGAAGGTCAAGATGATAAAGACCAGCTTGTGGAAAAACCCTTGGTGGATGCAGTAGAGGCCAATAATAGTACTGCTGGTGGCAAGTATGATTGGGTACCGGAAGAAGCTGAGATGATACTCAGAAGTGAGCCTGGATCAGAACATGAGGAGGATCTGGATGATTGGTCATCTAAAGGAGCAGAGCGAGTTCTGTGGATAGAGGAGGATTCAGCTGATGAAGAAACTGAAACCTTTAGTATAGAGCAGAATTGCAATGTGGCTAATGTTAAAAGTCCAGCTGGCATCAAAGgacatgaaaatgaaaaaaatgaacaagaaTCATCTATTGATGTATCTTTAGATCTTCTTAAACATCCTAATCCATTATCTGTAACCTCCTGTAACATCAGCAGCGGTTCCCCAGCTCATATTCAGACTGAACCCTCAAAAGAACCAGAAAACAAAGACATGGTTGTTAACCAACCTAACATCAATGACCAAGGCCTTTTCCCAAAAAACAACTCTCCAGCTGTCAGTAAAGAGGAAAGCAATAGCACTGTCACACAGGCACATGTAGTTTCCAATGATCTTCACGTTAAAAAACAAGGTCCTGAATCAGATTTGACTTCTGGCAACTTGGTCAACGAACAAGATCCTAGCCCAAAAAATATTCTGCCCATTAGTGGTGAAAACGAAACCAGTAAGAATGCACCAGTAACCGAAATCAACCAGCCTGTGCACAGTCAGCCAAAGTTGTGCTCTGAAAAAAGTCCACAAGTCCTCAATAATGAGGAACAGTCcaaccagctgggacagacagaGTCATTTATCTACACTTCCATCAACATCactaatgataatgatgatgatggtgtggATGACGAAGAAGATGAAGATGTAGACATTGATGGTGATGCCCCAGTACCTTTACTGGCAGGTCAGACCCCAGCAATATTCACTCCGCCAGTTGCACCTCTATCAAACACAGGTTTGGAGAATCTAAAGAGTTACCATGAGGTCCACAGTAAATTAGATAAGCAGTCAGACAACAGTGTTCGGATATCCAAAAGAGTCCATCATTTTGAAAGAGAGGATGGCGATGAAACAGATAAGAAAATGCTAAAGAAAAGGAGAACATTTCCTCAGCAAAAGGAACCACATCCAGACTCTGACAGCAATGAGGACGATTTAAGCAGTGGTGATGATAAGGATTCCATTATTGATTTAGTATCTTCCAGTAGCAGTGAAACAACAGAAGACAGTGCCAAATTGTCTAGTGAGGAAGATGATGCTGTTGACATTGACGCATTTGAAGAAAATCTACATAAGAGGAGGTTCAGAACGAGCAAAGATGGAGTTGCACGATACAGGAATTCAGGGGAAACCGATCAAGACATGAATAAGAGAACAGATGCTTCAAACAGACTGGATGATCTGCAGGTGATTGATCTAGAAAGACCTCTAACACattcagagaaagaaagagtgcgTCGAGGTGAACTGCGACTGTCCTTTGCTTCACTGAAAGCAGCCCTGAACATTGATGAACCAATTAAAATGTGCAAGCATGACATTCTCATTCAGGCCCATCTCATGATTCAGGCTCTAAAAGACCGGAAACAAAACTTAGAGGAGAGGAAACAAGCGTTGCTTCAGAAACAGTCATCTTATATTAGTAGGATTGCGCAATTATCTGGAAAGTCAGAGGAAATTGTTGAGAGGAATTTCAAAGAAAACTGTGAGCTTTCAACAGTACCAGCTTCAGTGAAAAGTTCCCAAATAAACCCCCGGCGCCTAGACAGTGATGGCAACCGTCTCCCTCCTCGTCTTGGGCTGTGGAGATCTAATAATTACATACGTAAAAGATCAGAGCAATCTTTTGGACACAGAGGAAGGAGACGAAAAATTTTCAGGGAAATATCCGAGGATGACTCTGAGGAGGCAGAGCATGTGGATGATCAAAACATGGAACCAATCTCAGTGCAGAGCCCCCAAATAAATCCTGGACGCCTAGATAGTGAAGGCACTCAACTCGCCCCTCGTCTTGTACCGTGGAAATCCAATAATGATGTAGGAAAAAGATCTACAAAGTCTGCTGAACCTTCAGTCACAGATGCTGCTGATGAAAGTTCAAATGCTGCCTTACCTGGCCGCCATTTAAATGGATCCTCGCCTTCAGTCAGACCAGgggACATAGTCTTGAAGCTTATGGCAGAAAAGCCCAATATTTTACCCCTCATCCCCTGTAGTAAAAAGCCCTCAGCAGAGCGCAGGCCATCAGaAACTGGACCATTGACTGGAACTGGAATGTTGCCAAAGATTGTATTGTATTCTTTTAGCAACGCTGACCCTAAAAAGCTTGAAACGGCTCCTCTGCCAAGTTGTTTTCAGGCTTTTAAATCTGCTGAGGCCTCACCGAATATAGTAGATCTGACAGAAGATGACCCAGGAATAGAAAGCAGTGACTCCTCTTTAACATTATGCAAAGAAGCGGATAATGTTTCAGTGTCAGAGGAATCAAATGAGGAGAACCCAGATTGCTCCTCACTGGTAAGCGAGTGTATGACCGAGAGTAAAACCTTGCCTCAGTTGGAGCAAAAGAAACAGGATACTCCAGAGGTGGTGAATGTTGAGAGAAGAAGGTCAGCTCGGCAAATGGAACGGCTTAGGAGCAGATCTGCAGCATTCTCCTCAGAGAGTGAGTccaaggaaaaaaagaagaaggttATTTGGATGAGGTGCGGTGGCTTTGGATAAATTGTGCTGAACTGCAGCATCTACAGCTTTTTTTTGAGTCTGTACATCTGAGTAGATGCCTACACCTCTCAACTGTTGACAGTTACTCAGTCTGTTAGTAATGtaccattttatatttttccctcCTACCTCGTGGATGCAGTAAATACTCCAGTGCCTAAACTGAGGAtttcaaaaattcaaacagcATTTGAACAAAGCATTAAATTAATGTATGAACTTTACCTTATCGTTTGGTAATGTATATCAATCCCATATTGGGGTAAAGTTATTAATATGCAGTTTGTATGGTCTTTATGCTTACTTGTACATAGATTTGTACTAATGGGGATCTCACATGACCAGGGAATAGATTTCACACTGCAAATGCATTTGCAATCATGTTTCTTACTGATTTGTTTGTTGATGTAATCCATTACTGATGTAATCCATTACTGATTGATTAATCACTTGTTTGTCcatgtaaataaaacagtttctcataattatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35764 lncRNA downstream 41384 46066648 ~ 46067188 (-) True G26612
TU35706 lncRNA downstream 258980 45847617 ~ 45849592 (-) True G26564
TU35704 lncRNA downstream 263641 45843174 ~ 45844931 (-) True G26563
XR_002652433.1 lncRNA downstream 365722 45733316 ~ 45742850 (-) True LOC111197418
XR_002649723.1 lncRNA downstream 504411 45597587 ~ 45604161 (-) True LOC111191909
TU35832 lncRNA upstream 232479 46361718 ~ 46361918 (-) True G26663
TU35837 lncRNA upstream 266722 46395961 ~ 46409064 (-) True G26666
TU35838 lncRNA upstream 266722 46395961 ~ 46409064 (-) False G26666
XR_002652516.1 lncRNA upstream 449048 46578287 ~ 46599431 (-) True LOC111197648
TU35951 lncRNA upstream 532880 46662119 ~ 46663963 (-) True G26751
XM_022686875.1 mRNA downstream 2403 46078208 ~ 46106169 (-) False LOC103025404
XM_007232828.3 mRNA downstream 2403 46078208 ~ 46106169 (-) True LOC103025404
XM_015601180.2 mRNA downstream 2404 46078208 ~ 46106168 (-) False LOC103025404
XM_015601179.2 mRNA downstream 2404 46078208 ~ 46106168 (-) False LOC103025404
XM_022678303.1 mRNA downstream 55849 46049834 ~ 46052723 (-) True LOC111194348
XM_015601184.2 mRNA upstream 188725 46317964 ~ 46329110 (-) True LOC103029737
XM_022687006.1 mRNA upstream 200167 46329406 ~ 46337541 (-) True LOC103042705
XM_007230704.3 mRNA upstream 222970 46352209 ~ 46360826 (-) False LOC103043020
XM_022687038.1 mRNA upstream 222970 46352209 ~ 46360826 (-) True LOC103043020
XM_022678311.1 mRNA upstream 234890 46364129 ~ 46374917 (-) True LOC111194350
TU35737 other downstream 172950 45935153 ~ 45935622 (-) True G26588
TU35470 other downstream 670987 45436109 ~ 45437585 (-) True G26388
TU35363 other downstream 1222771 44882778 ~ 44885801 (-) True G26295
TU35356 other downstream 1237893 44867094 ~ 44870679 (-) False ubxn2a
TU35291 other downstream 1309097 44769292 ~ 44799475 (-) False fkbp1b
TU35796 other upstream 162848 46292087 ~ 46292806 (-) True G26636
XR_001518806.2 other upstream 298178 46427417 ~ 46435925 (-) False naa30
TU35879 other upstream 389632 46518871 ~ 46521243 (-) False G26695
TU35877 other upstream 394409 46523648 ~ 46525996 (-) True G26695
TU35943 other upstream 404456 46533695 ~ 46535753 (-) True fkbp3

Expression Profile