RNA id: XM_007232836.2


Basic Information

Item Value
RNA id XM_007232836.2
length 4412
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC103027027
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46160651 ~ 46178257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCGGCGAAGCAGGAAGAAGAGAGCAGCGCCCCCccccacacgcacacacactcgcagcaCGGCGCGACCAGGGGCTGCTTTTCCATTTAACTAATAAATCCAGCTCTTTCGACGACCGCCAGGATTATGCCTCTGATCATTTTCTCAGAAAGCATGTGATGACCCAAGCCCGGAAAAAGGGTTCCCTCAGCCAGTGCCGTGGCGAGGGCCGCGACTATGTAGATGGCTGGTCCCATGGTAAGACCATGGGTAAAGCTTGGCCTGAGCGTTGCATTAAAGAGCGCAAGGGTCTGAAGGGTGTGACCAAGCGGGGCAAGCAAAAGGGACAAGAGGACATGGAACAATGGCTCCATCAAGGATTTAAAAGTCGAGCCAGGCTAGAGCAATCTCAAAACAAGAACAGAACTAAGAAGAATGTGGCTAAGAAAGGCAAGGCAAAAGCATCCAAGAAGTTGAGGGAGGAGAGGAACAGGAAGCTCTACCCGCTGCGAGGAAGGGGAAGCACACCAGAGGCCGAGGCCTTGAGTTGCCATGTCCTACTCACCCGCCTGGAGGAGGATGCTGTGGAACAGGGAAACGACTTAAGTGATGAAGATCCGAATGTAATTCGAGGAAGGAATCGGAAAAAGAAGAGCATCAAACCCATCAAGAAGCTAGAAAAAGCCAAGAAGTCTGTAAACACACCATCTAAAACGAAATCAGAACCAACAGTTGATACAATTCTAGCTCAGGAGCCTCGCAAGCGTCGGCTTGCCTCACTTAATGCGGAGGCGGTAAATAGCTTGCTGCTGGAAAAAGCAGATGCGCCAGTGGGCAGCAAACTCGctaagaaacagcagcatgaggCACCACCTGTTGCTATTGCAACAGATGATGCAAAGATTTGCTCCCTTTCTAAAAGGTCTCCTCAAGCCCACAGGACTGAATCGTGCCAAAGCCACAAGCAGGCCAAGAAAAGTAAGTCTGAGGAGAAGGATGACAGTGAACTGATGACTCTGTACGCTCCTGCTCCTAGACGGCTTGCTGGACTTAATGCTGCTGCCCTGTTGAAGCTCACAAGCTCCACTACAGGAAATAAGCAGCGTGCGAAGACGGACAAGGACAAGGACAAGGAAACAACAACGGGAAAGCAGACTGCACGGTCTAAAACCAGGGTGCGGCAGTCTAAGGAGCAAGGCATTAAACAGGCTCCACCACAAGGTGGttgtgcagtgtgtaagagcAGAGGATGTTTAGAGTCCAAACCCAAGTGGAAAGAGGCAGCGGACCATCACCGCCTAACCAAACAGGGGTACCAGTCTCGCAGTATGTTGGGATATCCCCTTAAGGTGGTGAAAGAAGAGCAAATGGAGACAGATATCAGTCCTCCTTACTTTTGCTGTCCTCCTGAGGGCTCAGTGGAATACTGTCACAGGTTGGCGCTGTTCCTGGGGCAGAAGGCCTACAGTGAGACAGAGGAGCACCCTGTGACCACAGTGAAGCACGAATGCCTGGTTCCTCCATCTTCACTGGCACACCCGACCCTCACCCTTAGTGCCCACCCATGCCTGTGTGCAGACCCCTGCTACTCTAGTTACTATGTTCACATTGCTCATCCTGGGCCTCCTTCAGCAAGCCTAAGTACACAGCCTCTACCTTGTGCACACAGCTCCCTGTGTGCCCGTAGAGTCCCCGGGTCCAAGCTGCTCTCCTCTTCCGTCTCCCATGCCTCAGGAATTCCACACCCTGCCTTCTGCAATTCGGTGGGGTCAGCCTGCTACAGCGAAGGCTGCAGGGTCGGCAGCTACGCGTTCAGTACTATGCAGCCAGTCACCAGCAGGGCGTGCACTTATACCACAGGCTGCTCCAACTGTAGCCATCAAATCAAAACAGAACGCTACTCTTCACCTCAAGGCGATCACAAGACCTCACTGCTTGTGCCACCGGCCTTGCCCCTTTCTGGCTGCCCCTTGCCCAGGGTAAGCCCGTCATCAACCGTTCTGCCGCGTCTTCTGTCCACCCTCTcagacaacagacagacagaggtcAGGCCTCAAGGGCCTAAAAAATGCCCCCAAAGCACCAAACCTCCCAATGGCTCCACCGCTAAGGGGCATTCAAAACTGTCTCAGAAACAGCCAGTGCCGAGCCCAGTAAGTGCCAAACAGCAGAAGAAGGCAAATCGCCATCGGACGACAAATGGCTGGCGACCTTTTGGAACCACAGAGAGAGAAGTCTTCATTGCGGGAGAAGATGAGACTGCGTTGCGACAGTGTTATGAAGGAGTAGAGCGAGATGGAGAAGTGATTCGGATCAGAGATACTGTGCTGTTGCGCTCTGGACCAAGAAAGAAGTCTCTACCGTATGTGGCCAAGATATCAGCTTTGTGGGATGACCCCAAAACAGGAGAGCTGATGATGAGTCTGTTCTGGTACTATcgacctgaacacacacagggaggcagggatcccagcatgcactgtgAGAATGAAATATTTGCTTCTCGGCATCAAGATGAAAACAGTGTGGCCTGTATTGAGGACAGATGCTATGTTTTGCCGTTAGCACAGTACTGTAGattTTGTGCCTTGGTAAAGCGCCGATCAGAGGGCGTACCCGACAGCACCCCAGTGGTGCCCCGCCCCTCCGACAGTGCCATCCCCTCTCACCGACTTGTGCCCGACGATGTTGACCCTGAGCTGGTTTACCTGTGTCGCCACGTCTACGACTTCCGTTACGGCCGCATACTGAAGAACCTGCAGTAAAGGTGCAAGACTGGTCATGGAGAACACACACCTGCACCTCACACACAATGAAGGACCTCCGTAATGAGAGGATCTGTGTGTGAAACCTATTGGTCTCCGGTTTTTGTTCTCATCATCGTAATTTATTGTTGGGAAGAGaggtttttatttgatttaggaGTAAAGTGAGGTTAGGAGAGTTTGGTTAGCCACTGAAGGAACATCTCTCATATATCAttactataaaaaaatgtgagatTTTTGGGAATGATTTAATCAAACACTTGTCTCCACATTCCTAGTAGTGGCATTATCTAAGGCTAGTACTATAGAAGAAGGAAGAACGACAGCTTCATTTCACTTTTCCTCAaccatattttaaatgtagGCTAGTTCTTATATCAGTACATCATGTTGTACTGCATAGAAGGCAAGAAGTTGCGGtgtgggtttgttttttttatttagattttttttatttgtttatattaatatcTCTTCAGTGATTTGTCTTTTACACTGGACTGTGACACTGGTGAGTTAGATCAGCTGCAATTTCAGATTATGAGCATAAacaaaaaatccttttttattGGAGGTTGACTTACAGCAGGACAAATCTGCATTCAGCTCAAATTTCTCTAAAGCAGAGTCTAGACTGACTTATTTTGAATGGAGAGAACAAGAGGAAGTGGACAAATCATGTTTTCGGTTCTCTTCCTCATGTTGTTTCTTTATGAGGGAATATATACTCCACTTTTTAATTCTGGTTTTACTATTCAAACAGTTGATTATTTAGTGGAGGAGAAGATGAACCTCCTGCCCACAGTGAAATGTCATTTAGTGGAGTTGTCCTCTCTTTCCATTCTTCTTTGTCTTGCCTTATTACATGCAGGTAGCTTTGTAGGCAGCTAGTTGTACCCAATCCTCTAAGAATATTCACTCCAGTAATCAAATAAACCAAAGGTCAGCACAGTGTTAATCCCCATTCTCACTAGTTAAGACCCCAGTATCTACCTGTGCTCTCTAATAGTGTAGATCAGAGGAAGtgattcatgtttttttgtttttgttttgttttgttttttaggaaAGGTTTTATAATATATTGAATTGAGACACTCAAGACttataacaaatatattttgaatatttattCGGCAAAGTCCTGCCTGTACCCATTTCCCCTTGCTTTTAGTAACCCTAGTGAAATTGCACTAATCCAttcctttatttgtttttcctttctctcactTTGCTGCTTGTTTTACTTTCCTTTTTAACCCGTGGCTCAGATTCTACCAACACTGTTCAGAGCAGTGATTTTATCAGCAAGAAAACCTGCAAGAAAGAAAACATCTTGCAGCATATGTTTTAATGTAGAGCAGAAAAAGAGCAAATCTCTACATATTTTAGGCATGGCAACTAGCAGCCATGCAGCCCTGCAGTTTACATTACTCTGAAAGGGTCCAGTACAAAATCATTCAAAATCATACAAAATATCATTCCAGATCTTCAGAAAGAAATATAATTCCACAGCAGTATACCCatgttgtctgtctgtttagTCTTTTGTAAGTTTACCTGGTCACATATATAATTTCTGAAGATCTGGAATACTTAATTGCGAACACTCTAGCCTAATAACAGAGTCAGCGTCCTGTCAGGCCAGGATTACACCAGTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35587 lncRNA upstream 77248 46080305 ~ 46083403 (+) True G26477
TU35583 lncRNA upstream 93464 46066888 ~ 46067187 (+) True G26476
TU35473 lncRNA upstream 621712 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA upstream 632066 45524488 ~ 45528585 (+) True G26402
TU35391 lncRNA upstream 1047683 45111185 ~ 45112968 (+) True G26322
TU35643 lncRNA downstream 177628 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 185627 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 231076 46409333 ~ 46409990 (+) True G26529
TU35839 lncRNA downstream 232174 46410431 ~ 46410875 (+) True G26667
TU35860 lncRNA downstream 301934 46480191 ~ 46480391 (+) True G26679
XM_022668060.1 mRNA upstream 26535 46132573 ~ 46134116 (+) True LOC103030371
XM_007232827.3 mRNA upstream 83667 46069573 ~ 46076984 (+) True LOC103025099
XM_022686811.1 mRNA upstream 214819 45934474 ~ 45945832 (+) True lamp5
XM_007232817.3 mRNA upstream 234550 45802756 ~ 45926101 (+) False plcb4
XM_015601183.2 mRNA downstream 14772 46193029 ~ 46201498 (+) True LOC103027954
XM_007232840.3 mRNA downstream 14775 46193032 ~ 46201496 (+) False LOC103027954
XM_022686974.1 mRNA downstream 14775 46193032 ~ 46199888 (+) False LOC103027954
XM_007232839.3 mRNA downstream 14779 46193036 ~ 46201492 (+) False LOC103027954
XM_007232841.3 mRNA downstream 14781 46193038 ~ 46199888 (+) False LOC103027954
TU34777 other upstream 2666336 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2735745 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2738605 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2797207 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3644094 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 350138 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 2100010 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 2102508 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2377540 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2377540 48555797 ~ 48641905 (+) False G26995

Expression Profile