RNA id: XM_022686974.1


Basic Information

Item Value
RNA id XM_022686974.1
length 1389
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC103027954
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46193029 ~ 46201498 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAATGTGTGTATGGGTGTCCCTGTGGATTAAGAAGGTCACTTGGGAGAAGAGTGTGTAGGAGTGTGGCCTGCTATACAATACagcacacttaaacacacacataggaTCTCCTtttacttacacacacaaacacacacacacgccaagGAGACCTCCCTTTCACATGGAGGAAGGCATGGCATTGCCAGAAGCTCACATGGAGGAACTGGTGGAGAACTCTGGATCCATGGCTGGTGAAGCTGGAGGATCACGGCTGAGACAGCAGTACCACAGTGATGTCCTGCTAGCACCTGAAGCAGACTTCATAGTAGATGACCATGTCTCAGCTCACAGTGGCATGGAGGTGGCAGACAGGCTCACATACCTGGAGCAGCGCATCCAGATGCAGGAGGACGAGATCCAACTGTTAAAGATGGCACTAGCAGACGTTCTGAAGAGACTTAACATCTCTGAGGAACAGACTGCTGCACTCAGCAAGAAAGGACCTGTTAAAGCTAGGCCTGCCTCTCTGGCCCTGTCTTCCAGAACATCAAGCAATGCTGCATCTTCACTGAGGAAGAGCTCCAGCTCCACACTGCCCTCTACCACACCCACTAGAAGCCCAgcaagcagtgtgaaagacagTCCGAGTGGACCACCAGGCAGACGCACTCCCGTCTCCATCACCACAACCACCTACAGGAAGCAGCAAGACAGCAAACCAAAGGAGGCCAATGTCAGCACTGTAGGAACCCGTCGTGTTACTCACTGCAAAGATCTTTCTGAGCCCCCTTCCAAAAAGGACTGGGTCTACTAAGATGGCAGTGGACACAGCCATGCAGCCCAGTGCATATCCACCTGCTAGCGGACCACCTCCGGAAAAAGTAGTAAACTTGGAGAGGATTAAAGCAGGAGCAGGAAAGAGCTCTACTGTGATCATCCCCCTGCAGCAGAAGAGCCCCTGCCAAAGCCCTTTCTCACCCAGCAACACTCCCTCTTACAAAAACCCCATCAAGTCACCCAGCCAGTACTTCCAGATCTGCTACTAAAGACTAAAAACTGGTAGTGCAGATGCTAACAGAAGCAGCATGGTTTACTATTGTTAATGAGTGGCAAATTAGTTGTTTGCTGATTGTTTGTGAATGATATATATTCAGATTTGTTGGATGAAAGTCAATAGAATTTGAGTATTTTGATTTATACAGTaggtaggttttttttttttttagaatatacGTTTCTATTTTTGACAGCCATGTTTACTTGTCTCATGCTAATTTGACGCAAATCAAatattttctttgtctttttgtctGTGCGCTTCTGCTCCATAGgcatgtctgtaaaaaatacttttgacaTAAAATGGTTGTATGGCTCAGTTTGCtttataaatcataaaaatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35587 lncRNA upstream 109629 46080305 ~ 46083403 (+) True G26477
TU35583 lncRNA upstream 125845 46066888 ~ 46067187 (+) True G26476
TU35473 lncRNA upstream 654093 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA upstream 664447 45524488 ~ 45528585 (+) True G26402
TU35391 lncRNA upstream 1080064 45111185 ~ 45112968 (+) True G26322
TU35643 lncRNA downstream 155997 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 163996 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 209445 46409333 ~ 46409990 (+) True G26529
TU35839 lncRNA downstream 210543 46410431 ~ 46410875 (+) True G26667
TU35860 lncRNA downstream 280303 46480191 ~ 46480391 (+) True G26679
XM_007232836.2 mRNA upstream 14775 46160651 ~ 46178257 (+) True LOC103027027
XM_022668060.1 mRNA upstream 58916 46132573 ~ 46134116 (+) True LOC103030371
XM_007232827.3 mRNA upstream 116048 46069573 ~ 46076984 (+) True LOC103025099
XM_022686811.1 mRNA upstream 247200 45934474 ~ 45945832 (+) True lamp5
XM_007232819.3 mRNA upstream 266931 45802760 ~ 45926101 (+) False plcb4
XM_007232842.2 mRNA downstream 34791 46234679 ~ 46289280 (+) True LOC103028674
XM_007232845.3 mRNA downstream 92120 46292008 ~ 46300124 (+) True LOC103029419
XM_007230706.3 mRNA downstream 141969 46341857 ~ 46352200 (+) True entpd5
XM_007230705.3 mRNA downstream 141969 46341857 ~ 46352200 (+) False entpd5
XM_007230707.3 mRNA downstream 141969 46341857 ~ 46352200 (+) False entpd5
TU34777 other upstream 2698717 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2768126 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2770986 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2829588 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3676475 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 328507 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 2078379 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 2080877 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2355909 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2355909 48555797 ~ 48641905 (+) False G26995

Expression Profile