RNA id: XM_007232842.2


Basic Information

Item Value
RNA id XM_007232842.2
length 2745
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC103028674
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46234679 ~ 46289280 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGGTGATGCCTCATAGCGAGCATCATCATTTCATTCAACCGAGAAGAGcactctatctctttctctctctcattctctctctctttccactaCTCACTCATTAATGTGCTCCTCCAGTGCGGCGCTCTTCGTCTGCTCTGATTGACTGAGGATGAGATTAcagctctttttctttttaaagcttatcacagttaatttgattttcattttttcctctttttgactATTGACTCTGCCGAGCTCTTCAAGGATTGGGGTTTTAGAAAGAAGCTAGGAGTGTGTGAAAGAGTGCTGTGTGTGATGGACGTTGGCCTTTCTGCAACTCCTTTCTGCTTTGGACAAGGTGGCTGAGATGCTTCTGCTGTTTCAGTTACTGAACCATTAACGTTAAGATCTACTACAAGGGTAGTGAGAACGGAAGAGGGGGAGGGGATCCTGACACCCACCGAGCAAACGAGCGAGTGAACGAGACGGCCGGTCAGAAGGtagaggagaaagaggaaagagCAACCTGTTCCTCTCTGCTATGACCTGAAGCGATGGATATTAACCTCCAGTCACACCGCTTCTACTTCCCCCAGATCTACTGTGATGCTGGCGCTCAGGTCACCGAGTATAAGATCAGtgagCAGAGCATTTGCCAGGCTCGTGCCTCGGTGATGGTCTACGATGACACCAGCAAGAAATGGGTGCCAATCAAGCCAGGCCAACAAGGCTTTAGCCGCATCAACATCTACCACAACACTGCCAACAATACCTTCCGTGTGGTGGGGGTCAAACTGCAGGACCAGCAGGTTGTCATTAACTACTCCATCGTAAAGGGGTTGAAATACAATCAGGCGACTCCGACATTTCACCAGTGGCGTGATGCCAGGCAGGTGTACGGACTCAACTTTGCCAGTAAGGAGGAGGCCACCACCTTCTCCAATGCAATGCTTTTCGCCCTCAATGTGCTCAGCACCCAGGATGGAGGTCCAGCTGTTCAGCGCCAGGTTCAAAATGGGCCCACCACAGATGAACTGGAGGCACAAAGAAGGCAAATGGAgatgcagcagcaacagcagcaacaacagcagcagcagcaacaaatGCAGGCGCATATTGAGAGAGAGCGACGATCGTCCAACTCAGGTTCCCCGTTTCAGGGACACCCCGTCGTGCTCTCTGTGGCACCTCCAAGTGTAGCGCCACCACCCATGTCAATGGGAGGACCTTgcccacctcctcctccaccacctgCACCACCTGGACCTCCTGGGCCTCCGCCCCCCTCAGCaggagctcctcctcctcccccgcCCCCCCTGCCTGTGGTTGGAGGGGGTTATGGGGGCCATGGGATGCACCACGAGGAAGCACAAGCACCCACCGGCCTCGCTGCCATGATTGCCGGAGCCAAACTGCGCCGAGTACAAAGGCCTGAGGATAGTTCAGCATCTGGAGCCAAAAACGAAGCCAACCGGACAAGTGGAGGGAGTGGTGGTCTGATGGAGGAGATGAATGCCCTGCTGGCACGAAGacGGAAAGCTGCAAACCAGTCTGAAGACAAGAAAGATGGAGACAGCCAAAATgATGATCCAAATTCCCCCTCTCCCATGTCTAGAGGACAGAACTCCTCAGATGGCGCAAAGAAACCATGGGATCGAGCCAACTCTGCTGAGAGATCATCACTTGTATCTAGGGTTCGACCCGTGGGGAGTGGTAGTGACACAGACGCCTTAGACTTTGACAGAATGAAACAGGAAATCTTGGAAGAAGTTGTTCGTGAATTGCACAAGGTGAAGGATGAAATCATTGATGCCATTAGACATGAACTTAGTAGAATTAGCACGACATAATCTCCCAGACCCGTGACCCATCTTTTATGAGACCCAAACCCCTGGCAGAACCTGCTGTAGCTGAAGAAGGGAAGACGTCGAGCAACGATACCAACATGTTAAAGCAAATGGATCATTTTGCTCTAACATGAACGGTACATGTGCTATCCCTCAGATATACAAATGGATGGAGGACACTTGCACTGATCTTTGTTTTTTgggtttaaattaatatttggcaACTGTCTTTTCAAAGTCTTGAGagaaatttgtttttattattgtttttcatttattattattattattattattattattattattattattggtggtggtggtggtagtggtgttCATGTAAGTGGTCGTAGGTTTCTAGTGATGAAATGATTAAAagataaaatgctaaaataatgataataatattaataatgataataataatgtcatTGGTCATTGCACATGTCTAAATGTAagccttttatatttttattgatctttattttcctttgccTGTGTTAAAAGGTTCATTATAAGCGTATACACTACCAGTTTACTTCTCACTACCtgataatgtttgttttttaagattttttttaaccttatggcaaaaaaaatgtgtaggTAATCACTGACAGaaagatttttaaaacaagATGGGAGCAGTGATGAGGGACCGGAGAAAAACTCTTGCATTTTTAGATATTGCAAActtatgaacaaaaaaaagaaagaaaaaaaaacatcagtacaCCAGAGTATTTGTGACCATgttgttaataaaatgtttattggcTGCAAGGATATGGTGAAGTATTGTTTGttctattatttcccttttttgaCCAAGTGCTTCCTGGTTTGGATGAAAAGGAAATAtaccttacatttaaaaagaactgaaatAAAACTGTGAAAACATG

Function

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0046907 intracellular transport biological_process
GO:0051289 protein homotetramerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0017124 SH3 domain binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K23487 EVL; Ena/VASP-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35587 lncRNA upstream 151276 46080305 ~ 46083403 (+) True G26477
TU35583 lncRNA upstream 167492 46066888 ~ 46067187 (+) True G26476
TU35473 lncRNA upstream 695740 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA upstream 706094 45524488 ~ 45528585 (+) True G26402
TU35391 lncRNA upstream 1121711 45111185 ~ 45112968 (+) True G26322
TU35643 lncRNA downstream 66605 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 74604 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 120053 46409333 ~ 46409990 (+) True G26529
TU35839 lncRNA downstream 121151 46410431 ~ 46410875 (+) True G26667
TU35860 lncRNA downstream 190911 46480191 ~ 46480391 (+) True G26679
XM_015601183.2 mRNA upstream 33181 46193029 ~ 46201498 (+) True LOC103027954
XM_022686962.1 mRNA upstream 33182 46195311 ~ 46201497 (+) False LOC103027954
XM_007232840.3 mRNA upstream 33183 46193032 ~ 46201496 (+) False LOC103027954
XM_007232839.3 mRNA upstream 33187 46193036 ~ 46201492 (+) False LOC103027954
XM_022686974.1 mRNA upstream 34791 46193032 ~ 46199888 (+) False LOC103027954
XM_007232845.3 mRNA downstream 2728 46292008 ~ 46300124 (+) True LOC103029419
XM_007230706.3 mRNA downstream 52577 46341857 ~ 46352200 (+) True entpd5
XM_007230705.3 mRNA downstream 52577 46341857 ~ 46352200 (+) False entpd5
XM_007230707.3 mRNA downstream 52577 46341857 ~ 46352200 (+) False entpd5
XM_022687080.1 mRNA downstream 130868 46420148 ~ 46430049 (+) True c3h14orf37
TU34777 other upstream 2740364 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2809773 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2812633 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2871235 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3718122 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 239115 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 1988987 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 1991485 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2266517 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2266517 48555797 ~ 48641905 (+) False G26995

Expression Profile