RNA id: XM_007232845.3


Basic Information

Item Value
RNA id XM_007232845.3
length 3591
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC103029419
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46292008 ~ 46300124 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTGAAAGTGGAGCGTAGTGGAGACGAGAGCGTGTGTGAGCGGAGTGGAGTTATTTGTATTAttggagagagagcgagagaaagggGGCGACAGCAGCAGCGGAGGAACAGGAGGCTACCTATCTGTCGTCTGAGGGAagggggtgtgtgtatgtgtgtgtttggggacaGTGAGCTCtgctgagtgagtgagtgtgactGAGtgatagtgagtgagtgtgtgtatatgtgcgaGCGAGAGAAACACAGCCAAGCTGGCGGAGTTCAACATGGCATCGGGAGAAACGCTGTACATAGAGACGGACGGGTCGGAGATGCCGGCTGAGATCGTGGAGCTGCACGAAATCGAAGTGGAAACGATCCCGGTGGAGACCATCGAGACCACGGTGGTCGGGGAGGACGACGACGACGATGATGACGACCACCAGCCCATGATCGCGCTGCAGCCGCTGGTGACGGACGACCCGAGCCAGCTCCACCACCATCAGGAGGTGATCCTGGTGCAGACCCGGGAGGAGGTGGTCGGCGGGGATGACTCGGACCTCCGGGCCGAGGACGGGTTCGAGGACCAGATCCTGATCCCCGTGCCCGCTCCCGGGGTGGAGGACGAGTACATCGGGCAgacgctgctaaccgtggcgGGGAAGAGCTCCGTGGGGAGGATGAAGAAGGGGGGCGGCAGCGGCAAGAAAGCGGGCAAAAAGAGCTACCTGAGCGGGGCCGAAGCCAGCGGGAGGAAGTGGGAGCAGAAGCAGGTGCAGATCAAGACCCTGGAGGGAGAGTTCTCAGTCACGATGTGGGCTTCAGATGACAAAAAGGACATTGACCATGAGACTGTGGTAGAAGAACAAATTATTGGTGAGAATTCTCCTCCAGACTACTCAGAATACATGACTGGAAAGAAGCTCCCTCCTGGTGGCATCCCAGGAATCGACCTCTCGGACCCCAAACAGCTAGCAGAGTTTGCCAGAATGAAGCCACGGAAGATCAAAGAGGATGATGCACCGAGGACGATAGCCTGCCCCCacaaaGGATGCACTAAGATGTTCAGGGATAACTCTGCCATGAGGAAACACCTACACACCCATGGGCCCCGGGTTCACGTGTGTGCTGAATGTGGAAAAGCCTTTGTGGAGAGTTCCAAACTAAAGCGGCACCAACTTGTTCACACCGGAGAAAAGCCTTTCCAGTGCACCTTTGAGGGCTGTGGGAAACGCTTCTCACTGGACTTTAATCTTCGCACACATGTCCGGATTCACACCGGAGATCGCCCTTATGTCTGCCCGTTTGACGGCTGCAATAAAAAGTTTGCCCAGTCCACCAACCTCAAGTCACACATTCTAACACACGCAAAAGCCAAAAACAACCAATGAGCACCTCCgttctgtttttccttttacacCTGAACTCAGCCTGAACACCACAAACCTAACACTGGAGGAATGAGCTGTGCTCCTCTGTTGTTCTCTTAAGGAGTGGGGGCAATAAAATAAGACCAGGAGgtctgaaaataaattatggcAATTATAAAAGACAAAAACTGAACTTTGGCAACCCATATGTCCTCACATCTGCCTGCTTAACTGCGTGGCTCTTACTGAGGAGCTGTATGAGTATGGCTGCATCTGACCCAGCTAACAACCCTCATGATTTGATGGCTTACTGTGGCCAGCGGAATGATGGAACTCATGGATGTCGTCCTCATCCATCACAGGAACGAGTAGAACTAGGACATTTGGACAGTTTGctccattttttttagttctcaAATAAATCTCACCAGTCTGCATAGATACAGTGGCATGCTGAAGTTCAAGCtccctggttaaaaaaaaaaaagtgaataactTTGTGTAAAAGATGAATGGATTGCCAAAACAGCATAAAGTTAAAGAGCCATGTTCATGATTgcttttttcctttgttttagCATTGCTGCTAACTAAAGGTAGAGTTTGGGCACCCTGCCTGGTTAGGACTTGTAAGTATTGCAGCTTGTAAATGTATTTCATAGCAGCAAAGAGTCTTTCTATTAGGGttggtttgtttgggttttttcaccctttttttgtttgattctaGTTCTATGAAATTTTTGGGCAATCTTTGATACACTGTTCTTTTCAAGTTTATCCACAAAAGCTTCAAAGATGATTAGATCGGAGTACTGTTAGGGCCATGGCAAAACCTTCAGCCTGTGCCTCCTGATGTAGTACTTTGTGGATTTTGAGGTGAGTTTAGGATAATAATCTTGCTGTTAAAGCCtggtatttatttaaatctatTGTTCCCTATACCAGTGAAATGTTTAAAAGCCAATCATTGGCACAGGTTTTAAAGGATTATTGATCAACCCCGGTGCTCTCTACTAAAAAAGTAgaatttctttttctctccaaacaTAGTTTTGCTTATTACAGCCAGAAGGTTCTAGTGCAAGGTCATCAGTCTACAAGACAcgtttttaaaatgctttatacTGATTCTGCTGCTGAATTTTGTGTTGAGGATTTTGACGACTCTTCCATGAAGgtcattttttttgtgccagttTTTCTGCACAGAAGAATAATGCACCATTGTTCCAGTTTACTAAATCCTCCTGAAGCTCTTttgcctttaatttttttttttttttttttttttttgactttcTAATAATCTTACTGGAACATCATTCTCAAAATAATCTCAACTtgacttcttttctttttgtcaaCTTCCATTTCAAGGAGTATAATATATAAGGCTTTGAAATTTACCTCACCTGATCTTTCctaaatataatcaaaaacaaGCCATAGCCCTAATGAGCTAATTAATAGCTGAGACTTTGGTAAAGTGAATCTCTTGGAGTGCCCAGAAGTTTGCATGGTGCTACGTTCCATGTTTTGCTCAGaatgttaattaaaatgtttcgaCTTCAACTTTATGCCTTGAGGAGATCAGGCCAACTCTTACTTATTTAACCTGTTCAGTAACAGAAACATTAACCAGGGTGCTCTAACCTCTGCATGCCACTGtatgatttttaattttgtatttctgAGTGTGCATATTGTACACTTATATTTGGGATGTGCTTAGAAATTCAACCTTGAGATTATTCTTTATCCATGAGGATTTAAGGTTTTGCATAGGACATGTTCTTCTTGGAAGGGTGGATCATAGTTACTGTAAGACAATACTTCAAaagtattttatgtaaaaagttatcttttactgttttgttttttttcctgtctttaTTTGGTTGTAATCTAACCATTGAATAATCTTGTATACGTGTATTGTATGGCTGTATGGAGATCATGTAGGAATGATAAGCAGCGTGATTTTCAAGTGTTTACTGCTTTAAAGTGTTTAGTCATCAgttactttctcttttttgtcacatttgtCTCACATGGAgaagaacatttaaaatcattttaaacccaTCTCACCACAAATCACAATGTGACCTATCATTTTCCTTTGTTTAGATTGTATTATAAAGGTCTAAaccataaaaatattatttgttaatatttacatttccatGTATTTCAGTGAGCTGCAATTAAAGAAAAAGGTGATAAGAATCCAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09201 YY; transcription factor YY

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35587 lncRNA upstream 208605 46080305 ~ 46083403 (+) True G26477
TU35583 lncRNA upstream 224821 46066888 ~ 46067187 (+) True G26476
TU35473 lncRNA upstream 753069 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA upstream 763423 45524488 ~ 45528585 (+) True G26402
TU35391 lncRNA upstream 1179040 45111185 ~ 45112968 (+) True G26322
TU35643 lncRNA downstream 55761 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 63760 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 109209 46409333 ~ 46409990 (+) True G26529
TU35839 lncRNA downstream 110307 46410431 ~ 46410875 (+) True G26667
TU35860 lncRNA downstream 180067 46480191 ~ 46480391 (+) True G26679
XM_007232842.2 mRNA upstream 2728 46234679 ~ 46289280 (+) True LOC103028674
XM_015601183.2 mRNA upstream 90510 46193029 ~ 46201498 (+) True LOC103027954
XM_022686962.1 mRNA upstream 90511 46195311 ~ 46201497 (+) False LOC103027954
XM_007232840.3 mRNA upstream 90512 46193032 ~ 46201496 (+) False LOC103027954
XM_007232839.3 mRNA upstream 90516 46193036 ~ 46201492 (+) False LOC103027954
XM_007230706.3 mRNA downstream 41733 46341857 ~ 46352200 (+) True entpd5
XM_007230705.3 mRNA downstream 41733 46341857 ~ 46352200 (+) False entpd5
XM_007230707.3 mRNA downstream 41733 46341857 ~ 46352200 (+) False entpd5
XM_022687080.1 mRNA downstream 120024 46420148 ~ 46430049 (+) True c3h14orf37
XM_007230715.3 mRNA downstream 120027 46420151 ~ 46430049 (+) False c3h14orf37
TU34777 other upstream 2797693 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2867102 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2869962 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2928564 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3775451 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 228271 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 1978143 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 1980641 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2255673 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2255673 48555797 ~ 48641905 (+) False G26995

Expression Profile