Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007233016.3 |
| length | 1326 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 7 |
| gene id | LOC103029839 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035899.1 |
| NCBI id | CM008302.1 |
| chromosome length | 74127438 |
| location | 61984639 ~ 61990664 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0019773 | proteasome core complex, alpha-subunit complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02731 | PSMA7; 20S proteasome subunit alpha 4 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU40178 | lncRNA | upstream | 46663 | 61937664 ~ 61937976 (+) | True | G29977 |
| TU40156 | lncRNA | upstream | 67015 | 61908703 ~ 61917624 (+) | False | G29963 |
| TU40273 | lncRNA | downstream | 56948 | 62047612 ~ 62092000 (+) | True | G30042 |
| TU40338 | lncRNA | downstream | 310170 | 62300834 ~ 62303159 (+) | False | G30097 |
| TU40343 | lncRNA | downstream | 310170 | 62300834 ~ 62303159 (+) | True | G30097 |
| TU40344 | lncRNA | downstream | 310170 | 62300834 ~ 62303159 (+) | False | G30097 |
| TU40359 | lncRNA | downstream | 333853 | 62324517 ~ 62356704 (+) | True | G30105 |
| XM_022664187.1 | mRNA | upstream | 1180 | 61950471 ~ 61983459 (+) | True | LOC103031223 |
| XM_007233019.2 | mRNA | upstream | 1181 | 61950471 ~ 61983458 (+) | False | LOC103031223 |
| XM_007238760.3 | mRNA | upstream | 48938 | 61926080 ~ 61935701 (+) | False | LOC103046322 |
| XM_007238742.3 | mRNA | upstream | 279811 | 61693955 ~ 61704828 (+) | False | l3hypdh |
| XM_022664062.1 | mRNA | upstream | 279811 | 61694068 ~ 61704828 (+) | True | l3hypdh |
| XM_007257006.3 | mRNA | downstream | 801084 | 62791748 ~ 62793588 (+) | True | LOC103033766 |
| XM_022678415.1 | mRNA | downstream | 848556 | 62839220 ~ 62853288 (+) | True | LOC103045797 |
| XM_007257008.2 | mRNA | downstream | 878447 | 62869111 ~ 62885298 (+) | True | LOC103034413 |
| XM_015607799.2 | mRNA | downstream | 898204 | 62888868 ~ 62907516 (+) | True | LOC103046101 |
| XM_007257051.3 | mRNA | downstream | 918427 | 62909091 ~ 62925805 (+) | True | LOC103046397 |
| TU40175 | other | upstream | 48556 | 61926106 ~ 61936083 (+) | True | LOC103046322 |
| trnad-guc_1 | other | upstream | 287768 | 61696800 ~ 61696871 (+) | True | trnad-guc_1 |
| trnad-guc | other | upstream | 291355 | 61693213 ~ 61693284 (+) | True | trnad-guc |
| XR_002649037.1 | other | upstream | 1541132 | 60430861 ~ 60443507 (+) | True | LOC111190190 |
| TU39573 | other | upstream | 2386398 | 59590989 ~ 59598241 (+) | False | nme6 |
| TU40444 | other | downstream | 848571 | 62839235 ~ 62843043 (+) | False | LOC103045797 |
| TU40713 | other | downstream | 1345070 | 63335734 ~ 63345693 (+) | True | G30362 |
| TU40718 | other | downstream | 1345070 | 63335734 ~ 63345693 (+) | False | G30362 |
| TU40730 | other | downstream | 1345070 | 63335734 ~ 63345693 (+) | False | G30362 |
| TU40731 | other | downstream | 1345070 | 63335734 ~ 63345693 (+) | False | G30362 |
